miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18958 3' -64.2 NC_004683.1 + 38580 0.67 0.2769
Target:  5'- gGCCGCauaagaaACCC-CCGCCGGacGGgGCgGGGg -3'
miRNA:   3'- -CGGCG-------UGGGcGGCGGUU--CCgCGgCUC- -5'
18958 3' -64.2 NC_004683.1 + 7401 0.67 0.271019
Target:  5'- gGCUGCcaGCaCCGCCGCgGuuggGGGCGCggUGAGc -3'
miRNA:   3'- -CGGCG--UG-GGCGGCGgU----UCCGCG--GCUC- -5'
18958 3' -64.2 NC_004683.1 + 40604 0.67 0.271019
Target:  5'- aUCGagugGCCCGCCGaggGGGGCGCCGuGc -3'
miRNA:   3'- cGGCg---UGGGCGGCgg-UUCCGCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 24189 0.67 0.267154
Target:  5'- -gCGCGCCUGCCGCuCAAGcucggcucauccgacGC-CCGGGg -3'
miRNA:   3'- cgGCGUGGGCGGCG-GUUC---------------CGcGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 10335 0.67 0.264603
Target:  5'- uCUGC-CaCCGCUGUCGcaaAGcGCGCCGAGa -3'
miRNA:   3'- cGGCGuG-GGCGGCGGU---UC-CGCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 48047 0.67 0.264603
Target:  5'- cCCGCGCUCgaaguaguGCC-CCGGGGUGCCGcGGa -3'
miRNA:   3'- cGGCGUGGG--------CGGcGGUUCCGCGGC-UC- -5'
18958 3' -64.2 NC_004683.1 + 5570 0.67 0.264603
Target:  5'- aCUGCA-CgGCCGCCGAGGacaCGCCGuGc -3'
miRNA:   3'- cGGCGUgGgCGGCGGUUCC---GCGGCuC- -5'
18958 3' -64.2 NC_004683.1 + 40186 0.67 0.264603
Target:  5'- gGCCGCGuCCgGCUggucuGUCAAGGCGCgcUGGGc -3'
miRNA:   3'- -CGGCGU-GGgCGG-----CGGUUCCGCG--GCUC- -5'
18958 3' -64.2 NC_004683.1 + 53940 0.67 0.264603
Target:  5'- aUCGgGCCCuucucaUCGCCGGGGUGCaCGAGg -3'
miRNA:   3'- cGGCgUGGGc-----GGCGGUUCCGCG-GCUC- -5'
18958 3' -64.2 NC_004683.1 + 506 0.67 0.264603
Target:  5'- cGCCGCGCCagccaCCGCCu--GCGCCa-- -3'
miRNA:   3'- -CGGCGUGGgc---GGCGGuucCGCGGcuc -5'
18958 3' -64.2 NC_004683.1 + 40948 0.67 0.25831
Target:  5'- cGCCGCcguuGCCCGUCgGCCA---CGCCGAc -3'
miRNA:   3'- -CGGCG----UGGGCGG-CGGUuccGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 1127 0.67 0.25831
Target:  5'- uGCUGCACaaGCuCGUCAAGcGCgGCCGGu -3'
miRNA:   3'- -CGGCGUGggCG-GCGGUUC-CG-CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 39694 0.67 0.25831
Target:  5'- gGCgGCGCCCaCC-CCGgaacGGGCGCCcaGAGg -3'
miRNA:   3'- -CGgCGUGGGcGGcGGU----UCCGCGG--CUC- -5'
18958 3' -64.2 NC_004683.1 + 23992 0.67 0.25831
Target:  5'- uGCCGuCGgCCGCCacGCCuacgcGGCGCUGGa -3'
miRNA:   3'- -CGGC-GUgGGCGG--CGGuu---CCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 6467 0.67 0.25831
Target:  5'- uGUCGCugUCGUCGaacAGGuCGCCGGGg -3'
miRNA:   3'- -CGGCGugGGCGGCgguUCC-GCGGCUC- -5'
18958 3' -64.2 NC_004683.1 + 54232 0.67 0.25831
Target:  5'- gGCCGUugACCUuugGCCGCUc-GGCGUCGAu -3'
miRNA:   3'- -CGGCG--UGGG---CGGCGGuuCCGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 7411 0.67 0.255828
Target:  5'- gGCCGgGCgCGCUGCCAcauuccacaucgacGGGCcgaucauGCCGAa -3'
miRNA:   3'- -CGGCgUGgGCGGCGGU--------------UCCG-------CGGCUc -5'
18958 3' -64.2 NC_004683.1 + 25756 0.67 0.252141
Target:  5'- gGCCGCugCCGUCgagcacgcugGCCGAGGagucugGCCGu- -3'
miRNA:   3'- -CGGCGugGGCGG----------CGGUUCCg-----CGGCuc -5'
18958 3' -64.2 NC_004683.1 + 20619 0.67 0.252141
Target:  5'- cGCCGUugCCgccgguGCCGCCGGugaucGUGCCGGa -3'
miRNA:   3'- -CGGCGugGG------CGGCGGUUc----CGCGGCUc -5'
18958 3' -64.2 NC_004683.1 + 51302 0.67 0.252141
Target:  5'- uGCCGaGCCCGUucgaCGCCAcagGGGCGCUc-- -3'
miRNA:   3'- -CGGCgUGGGCG----GCGGU---UCCGCGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.