miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 9695 0.72 0.138342
Target:  5'- -aCGCGGUGGCCGACCGUGa---GGCg -3'
miRNA:   3'- gcGUGCCGCCGGCUGGCGCgagcUCG- -5'
18960 5' -63 NC_004683.1 + 8034 0.72 0.14199
Target:  5'- gCGCACcGCGGUCGAgCGCGacaUCGAuGCc -3'
miRNA:   3'- -GCGUGcCGCCGGCUgGCGCg--AGCU-CG- -5'
18960 5' -63 NC_004683.1 + 45156 0.72 0.14199
Target:  5'- aGCACGGgcUGGCCGACCGCaGCgaCGuuGCc -3'
miRNA:   3'- gCGUGCC--GCCGGCUGGCG-CGa-GCu-CG- -5'
18960 5' -63 NC_004683.1 + 48448 0.72 0.14199
Target:  5'- uCGCACGGCaGCCGGa-GUG-UCGAGCa -3'
miRNA:   3'- -GCGUGCCGcCGGCUggCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 6938 0.72 0.14199
Target:  5'- cCGa--GGCGGCCGACUG-GCggCGGGCg -3'
miRNA:   3'- -GCgugCCGCCGGCUGGCgCGa-GCUCG- -5'
18960 5' -63 NC_004683.1 + 9609 0.72 0.14199
Target:  5'- cCGCACGGUccagaaauGGCC-ACUGCGCaaGGGCg -3'
miRNA:   3'- -GCGUGCCG--------CCGGcUGGCGCGagCUCG- -5'
18960 5' -63 NC_004683.1 + 53706 0.72 0.149551
Target:  5'- gGuCGCGGCGGgCCuGAUCGCGC-CGcAGCu -3'
miRNA:   3'- gC-GUGCCGCC-GG-CUGGCGCGaGC-UCG- -5'
18960 5' -63 NC_004683.1 + 12485 0.72 0.149551
Target:  5'- gCGCGCGGUGGCCaGCUGC---UGAGCg -3'
miRNA:   3'- -GCGUGCCGCCGGcUGGCGcgaGCUCG- -5'
18960 5' -63 NC_004683.1 + 41843 0.72 0.153071
Target:  5'- gGCGuCGGCGGCgguauCGACgCGCggguaggucaucgGCUCGGGCa -3'
miRNA:   3'- gCGU-GCCGCCG-----GCUG-GCG-------------CGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 1771 0.72 0.153467
Target:  5'- gGCAgCaGCGcGCCGGCCGCGCUgCGAu- -3'
miRNA:   3'- gCGU-GcCGC-CGGCUGGCGCGA-GCUcg -5'
18960 5' -63 NC_004683.1 + 37569 0.71 0.161579
Target:  5'- gCGgGCuGCGGcCCGuACCGCGUccacaaUCGAGCg -3'
miRNA:   3'- -GCgUGcCGCC-GGC-UGGCGCG------AGCUCG- -5'
18960 5' -63 NC_004683.1 + 44520 0.71 0.161579
Target:  5'- gGCGCGGUGGCgCG-CUGCGCgCGuuguGCg -3'
miRNA:   3'- gCGUGCCGCCG-GCuGGCGCGaGCu---CG- -5'
18960 5' -63 NC_004683.1 + 28628 0.71 0.164509
Target:  5'- gGUuuGGCGGCCGacggccgagacuugGCgGCGCUCG-GCg -3'
miRNA:   3'- gCGugCCGCCGGC--------------UGgCGCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 427 0.71 0.165779
Target:  5'- gCGCagGCGGUGGCUGGCgCgGCGgUCGAGg -3'
miRNA:   3'- -GCG--UGCCGCCGGCUG-G-CGCgAGCUCg -5'
18960 5' -63 NC_004683.1 + 22658 0.71 0.165779
Target:  5'- aCGCGCGuGC-GCCGAggugaucaCCGCGCUUG-GCa -3'
miRNA:   3'- -GCGUGC-CGcCGGCU--------GGCGCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 33930 0.71 0.165779
Target:  5'- gGCcuGCGGUGGUcccggCGACCGCGCgagcucgcaGAGCa -3'
miRNA:   3'- gCG--UGCCGCCG-----GCUGGCGCGag-------CUCG- -5'
18960 5' -63 NC_004683.1 + 22031 0.71 0.165779
Target:  5'- gGUgaacuCGGCGGCCGcACCGCcaccGC-CGGGCg -3'
miRNA:   3'- gCGu----GCCGCCGGC-UGGCG----CGaGCUCG- -5'
18960 5' -63 NC_004683.1 + 41286 0.71 0.165779
Target:  5'- gGCGuccuCGGCGGCCuucGCCGCGUcggCGGGUg -3'
miRNA:   3'- gCGU----GCCGCCGGc--UGGCGCGa--GCUCG- -5'
18960 5' -63 NC_004683.1 + 5485 0.71 0.165779
Target:  5'- gGCACGGCGuGUccucggCGGCCGUGCagUgGAGCu -3'
miRNA:   3'- gCGUGCCGC-CG------GCUGGCGCG--AgCUCG- -5'
18960 5' -63 NC_004683.1 + 1657 0.71 0.170076
Target:  5'- -uCAUGGCGGCCGugCG-GUUgGGGCc -3'
miRNA:   3'- gcGUGCCGCCGGCugGCgCGAgCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.