miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 51848 1.1 0.000191
Target:  5'- uCGCACGGCGGCCGACCGCGCUCGAGCu -3'
miRNA:   3'- -GCGUGCCGCCGGCUGGCGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 2749 0.78 0.049909
Target:  5'- uGCGCGGCGGCCG-CgGCgaGCUCG-GCg -3'
miRNA:   3'- gCGUGCCGCCGGCuGgCG--CGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 5920 0.78 0.052716
Target:  5'- gGCGCcuuGGCGGCgGuGCCGCGCggCGAGCu -3'
miRNA:   3'- gCGUG---CCGCCGgC-UGGCGCGa-GCUCG- -5'
18960 5' -63 NC_004683.1 + 48648 0.76 0.071112
Target:  5'- uGCACGGCGGCCGguguGCCGUuccuGUUCaAGCa -3'
miRNA:   3'- gCGUGCCGCCGGC----UGGCG----CGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 11597 0.76 0.075064
Target:  5'- aGCACGGC-GCCGAaCGCuGCUCGuGCg -3'
miRNA:   3'- gCGUGCCGcCGGCUgGCG-CGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 46108 0.76 0.08117
Target:  5'- gGCGCGGgaccgcuCGGCCG-CCGCG-UCGGGCa -3'
miRNA:   3'- gCGUGCC-------GCCGGCuGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 25582 0.75 0.08822
Target:  5'- gGCACGGCGGCCG-UCGCaGUUCaucAGCa -3'
miRNA:   3'- gCGUGCCGCCGGCuGGCG-CGAGc--UCG- -5'
18960 5' -63 NC_004683.1 + 33522 0.75 0.093074
Target:  5'- gCGCguaGCGGCGGUCGGCCagugGUGCgguaCGAGCu -3'
miRNA:   3'- -GCG---UGCCGCCGGCUGG----CGCGa---GCUCG- -5'
18960 5' -63 NC_004683.1 + 46024 0.74 0.100832
Target:  5'- cCGaCGCGGCGGCCGAgcggucCCGCGCcaCGAuGUg -3'
miRNA:   3'- -GC-GUGCCGCCGGCU------GGCGCGa-GCU-CG- -5'
18960 5' -63 NC_004683.1 + 23918 0.74 0.100832
Target:  5'- gGCGUGGCGGCCGACgGCaucgUCGGGCc -3'
miRNA:   3'- gCGUGCCGCCGGCUGgCGcg--AGCUCG- -5'
18960 5' -63 NC_004683.1 + 44781 0.74 0.106339
Target:  5'- --gGCGGCGGCgGGCCGCGUgcccgCGAucGCg -3'
miRNA:   3'- gcgUGCCGCCGgCUGGCGCGa----GCU--CG- -5'
18960 5' -63 NC_004683.1 + 13685 0.74 0.108332
Target:  5'- uGC-CGGCGagcuggcccgcauaGCCGAUCGCGCgguuggCGAGCu -3'
miRNA:   3'- gCGuGCCGC--------------CGGCUGGCGCGa-----GCUCG- -5'
18960 5' -63 NC_004683.1 + 51925 0.73 0.118209
Target:  5'- aGCGCGGuCGGCCG-CCGUGCgaacAGCu -3'
miRNA:   3'- gCGUGCC-GCCGGCuGGCGCGagc-UCG- -5'
18960 5' -63 NC_004683.1 + 313 0.73 0.118209
Target:  5'- aGCAgCGGCGGCaucGCgGCGCUCgGAGUg -3'
miRNA:   3'- gCGU-GCCGCCGgc-UGgCGCGAG-CUCG- -5'
18960 5' -63 NC_004683.1 + 647 0.73 0.124597
Target:  5'- uCGaAUGGcCGGUCGACgGCGUUCGAGUu -3'
miRNA:   3'- -GCgUGCC-GCCGGCUGgCGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 1238 0.73 0.127575
Target:  5'- gCGCuuACGGggcgccaacuccuCGGaCCGGCCGCGCUugaCGAGCu -3'
miRNA:   3'- -GCG--UGCC-------------GCC-GGCUGGCGCGA---GCUCG- -5'
18960 5' -63 NC_004683.1 + 10669 0.73 0.12791
Target:  5'- aGCGCGGCGcGCCuucucGACC-CGCUCagccuGAGCg -3'
miRNA:   3'- gCGUGCCGC-CGG-----CUGGcGCGAG-----CUCG- -5'
18960 5' -63 NC_004683.1 + 46689 0.73 0.12791
Target:  5'- gGCGCGGCGGCCuuGCCGuCGCggcccUCGAccgGCa -3'
miRNA:   3'- gCGUGCCGCCGGc-UGGC-GCG-----AGCU---CG- -5'
18960 5' -63 NC_004683.1 + 18192 0.73 0.131304
Target:  5'- uGC-CGGCGG-CGACCGCGaUCGuGCc -3'
miRNA:   3'- gCGuGCCGCCgGCUGGCGCgAGCuCG- -5'
18960 5' -63 NC_004683.1 + 56247 0.73 0.134781
Target:  5'- gGCGCGGUGGCCa---GCGCggcgUGAGCg -3'
miRNA:   3'- gCGUGCCGCCGGcuggCGCGa---GCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.