miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 275 0.71 0.17897
Target:  5'- uCGCgACGGUGGUCaaggagcuGACCGCGgC-CGGGCg -3'
miRNA:   3'- -GCG-UGCCGCCGG--------CUGGCGC-GaGCUCG- -5'
18960 5' -63 NC_004683.1 + 6938 0.72 0.14199
Target:  5'- cCGa--GGCGGCCGACUG-GCggCGGGCg -3'
miRNA:   3'- -GCgugCCGCCGGCUGGCgCGa-GCUCG- -5'
18960 5' -63 NC_004683.1 + 28628 0.71 0.164509
Target:  5'- gGUuuGGCGGCCGacggccgagacuugGCgGCGCUCG-GCg -3'
miRNA:   3'- gCGugCCGCCGGC--------------UGgCGCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 427 0.71 0.165779
Target:  5'- gCGCagGCGGUGGCUGGCgCgGCGgUCGAGg -3'
miRNA:   3'- -GCG--UGCCGCCGGCUG-G-CGCgAGCUCg -5'
18960 5' -63 NC_004683.1 + 5485 0.71 0.165779
Target:  5'- gGCACGGCGuGUccucggCGGCCGUGCagUgGAGCu -3'
miRNA:   3'- gCGUGCCGC-CG------GCUGGCGCG--AgCUCG- -5'
18960 5' -63 NC_004683.1 + 22658 0.71 0.165779
Target:  5'- aCGCGCGuGC-GCCGAggugaucaCCGCGCUUG-GCa -3'
miRNA:   3'- -GCGUGC-CGcCGGCU--------GGCGCGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 1657 0.71 0.170076
Target:  5'- -uCAUGGCGGCCGugCG-GUUgGGGCc -3'
miRNA:   3'- gcGUGCCGCCGGCugGCgCGAgCUCG- -5'
18960 5' -63 NC_004683.1 + 9942 0.71 0.174472
Target:  5'- gGCACcGCGG-CGACCGUGa-CGAGCg -3'
miRNA:   3'- gCGUGcCGCCgGCUGGCGCgaGCUCG- -5'
18960 5' -63 NC_004683.1 + 47583 0.71 0.174472
Target:  5'- uGCgACGGCuGCgUGGCgGCGUUCGGGCc -3'
miRNA:   3'- gCG-UGCCGcCG-GCUGgCGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 9609 0.72 0.14199
Target:  5'- cCGCACGGUccagaaauGGCC-ACUGCGCaaGGGCg -3'
miRNA:   3'- -GCGUGCCG--------CCGGcUGGCGCGagCUCG- -5'
18960 5' -63 NC_004683.1 + 45156 0.72 0.14199
Target:  5'- aGCACGGgcUGGCCGACCGCaGCgaCGuuGCc -3'
miRNA:   3'- gCGUGCC--GCCGGCUGGCG-CGa-GCu-CG- -5'
18960 5' -63 NC_004683.1 + 8034 0.72 0.14199
Target:  5'- gCGCACcGCGGUCGAgCGCGacaUCGAuGCc -3'
miRNA:   3'- -GCGUGcCGCCGGCUgGCGCg--AGCU-CG- -5'
18960 5' -63 NC_004683.1 + 2749 0.78 0.049909
Target:  5'- uGCGCGGCGGCCG-CgGCgaGCUCG-GCg -3'
miRNA:   3'- gCGUGCCGCCGGCuGgCG--CGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 48648 0.76 0.071112
Target:  5'- uGCACGGCGGCCGguguGCCGUuccuGUUCaAGCa -3'
miRNA:   3'- gCGUGCCGCCGGC----UGGCG----CGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 25582 0.75 0.08822
Target:  5'- gGCACGGCGGCCG-UCGCaGUUCaucAGCa -3'
miRNA:   3'- gCGUGCCGCCGGCuGGCG-CGAGc--UCG- -5'
18960 5' -63 NC_004683.1 + 23918 0.74 0.100832
Target:  5'- gGCGUGGCGGCCGACgGCaucgUCGGGCc -3'
miRNA:   3'- gCGUGCCGCCGGCUGgCGcg--AGCUCG- -5'
18960 5' -63 NC_004683.1 + 46024 0.74 0.100832
Target:  5'- cCGaCGCGGCGGCCGAgcggucCCGCGCcaCGAuGUg -3'
miRNA:   3'- -GC-GUGCCGCCGGCU------GGCGCGa-GCU-CG- -5'
18960 5' -63 NC_004683.1 + 44781 0.74 0.106339
Target:  5'- --gGCGGCGGCgGGCCGCGUgcccgCGAucGCg -3'
miRNA:   3'- gcgUGCCGCCGgCUGGCGCGa----GCU--CG- -5'
18960 5' -63 NC_004683.1 + 647 0.73 0.124597
Target:  5'- uCGaAUGGcCGGUCGACgGCGUUCGAGUu -3'
miRNA:   3'- -GCgUGCC-GCCGGCUGgCGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 9695 0.72 0.138342
Target:  5'- -aCGCGGUGGCCGACCGUGa---GGCg -3'
miRNA:   3'- gcGUGCCGCCGGCUGGCGCgagcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.