miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 275 0.71 0.17897
Target:  5'- uCGCgACGGUGGUCaaggagcuGACCGCGgC-CGGGCg -3'
miRNA:   3'- -GCG-UGCCGCCGG--------CUGGCGC-GaGCUCG- -5'
18960 5' -63 NC_004683.1 + 313 0.73 0.118209
Target:  5'- aGCAgCGGCGGCaucGCgGCGCUCgGAGUg -3'
miRNA:   3'- gCGU-GCCGCCGgc-UGgCGCGAG-CUCG- -5'
18960 5' -63 NC_004683.1 + 427 0.71 0.165779
Target:  5'- gCGCagGCGGUGGCUGGCgCgGCGgUCGAGg -3'
miRNA:   3'- -GCG--UGCCGCCGGCUG-G-CGCgAGCUCg -5'
18960 5' -63 NC_004683.1 + 557 0.66 0.343636
Target:  5'- gGCcccgaGGUGGCCGACCuguGCGaCUUG-GCg -3'
miRNA:   3'- gCGug---CCGCCGGCUGG---CGC-GAGCuCG- -5'
18960 5' -63 NC_004683.1 + 647 0.73 0.124597
Target:  5'- uCGaAUGGcCGGUCGACgGCGUUCGAGUu -3'
miRNA:   3'- -GCgUGCC-GCCGGCUGgCGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 1238 0.73 0.127575
Target:  5'- gCGCuuACGGggcgccaacuccuCGGaCCGGCCGCGCUugaCGAGCu -3'
miRNA:   3'- -GCG--UGCC-------------GCC-GGCUGGCGCGA---GCUCG- -5'
18960 5' -63 NC_004683.1 + 1440 0.7 0.213412
Target:  5'- gGCGCucGCGGCCGAacuCgGCGggaUCGAGCg -3'
miRNA:   3'- gCGUGc-CGCCGGCU---GgCGCg--AGCUCG- -5'
18960 5' -63 NC_004683.1 + 1657 0.71 0.170076
Target:  5'- -uCAUGGCGGCCGugCG-GUUgGGGCc -3'
miRNA:   3'- gcGUGCCGCCGGCugGCgCGAgCUCG- -5'
18960 5' -63 NC_004683.1 + 1771 0.72 0.153467
Target:  5'- gGCAgCaGCGcGCCGGCCGCGCUgCGAu- -3'
miRNA:   3'- gCGU-GcCGC-CGGCUGGCGCGA-GCUcg -5'
18960 5' -63 NC_004683.1 + 2749 0.78 0.049909
Target:  5'- uGCGCGGCGGCCG-CgGCgaGCUCG-GCg -3'
miRNA:   3'- gCGUGCCGCCGGCuGgCG--CGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 3183 0.66 0.359416
Target:  5'- uGCGCGGCGGCggugaGACaCGCauuGC-CGcGGCa -3'
miRNA:   3'- gCGUGCCGCCGg----CUG-GCG---CGaGC-UCG- -5'
18960 5' -63 NC_004683.1 + 3435 0.66 0.375695
Target:  5'- aGgAC-GCGGCCGAcauccagaagguCCGCGC-CGAGa -3'
miRNA:   3'- gCgUGcCGCCGGCU------------GGCGCGaGCUCg -5'
18960 5' -63 NC_004683.1 + 3647 0.66 0.381509
Target:  5'- cCGgGCGGCaagaguugaacgcuGGUCaGGCCgguGUGCUUGAGCa -3'
miRNA:   3'- -GCgUGCCG--------------CCGG-CUGG---CGCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 3655 0.69 0.235552
Target:  5'- --aGCGuGCGGcCCGGCCGCcGCUgGAGa -3'
miRNA:   3'- gcgUGC-CGCC-GGCUGGCG-CGAgCUCg -5'
18960 5' -63 NC_004683.1 + 3745 0.67 0.299337
Target:  5'- cCGCacacucuccaGCGGCGGCCgGGCCGCacGCUU-AGUu -3'
miRNA:   3'- -GCG----------UGCCGCCGG-CUGGCG--CGAGcUCG- -5'
18960 5' -63 NC_004683.1 + 4942 0.69 0.252784
Target:  5'- --aGCGGCGGCCaGCgGCGCaugcgcgUCGAGg -3'
miRNA:   3'- gcgUGCCGCCGGcUGgCGCG-------AGCUCg -5'
18960 5' -63 NC_004683.1 + 5021 0.7 0.203028
Target:  5'- gCGCAUGcGCcGCUGGCCGCcGCUCuGAGg -3'
miRNA:   3'- -GCGUGC-CGcCGGCUGGCG-CGAG-CUCg -5'
18960 5' -63 NC_004683.1 + 5211 0.66 0.359416
Target:  5'- uGCAucuucuCGaUGGCCGACaGCGCcCGGGCa -3'
miRNA:   3'- gCGU------GCcGCCGGCUGgCGCGaGCUCG- -5'
18960 5' -63 NC_004683.1 + 5485 0.71 0.165779
Target:  5'- gGCACGGCGuGUccucggCGGCCGUGCagUgGAGCu -3'
miRNA:   3'- gCGUGCCGC-CG------GCUGGCGCG--AgCUCG- -5'
18960 5' -63 NC_004683.1 + 5568 0.66 0.391614
Target:  5'- uGCACGGCcGCCGaggacacGCCGUGCcacacaUCGccgguGGCg -3'
miRNA:   3'- gCGUGCCGcCGGC-------UGGCGCG------AGC-----UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.