miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18960 5' -63 NC_004683.1 + 26109 0.66 0.343636
Target:  5'- uGCAUGGUGuGCagGAuCUGCG-UCGAGCg -3'
miRNA:   3'- gCGUGCCGC-CGg-CU-GGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 46550 0.66 0.384019
Target:  5'- gGCGCGGauccgGGCCGGCa----UCGAGCg -3'
miRNA:   3'- gCGUGCCg----CCGGCUGgcgcgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 3183 0.66 0.359416
Target:  5'- uGCGCGGCGGCggugaGACaCGCauuGC-CGcGGCa -3'
miRNA:   3'- gCGUGCCGCCGg----CUG-GCG---CGaGC-UCG- -5'
18960 5' -63 NC_004683.1 + 20391 0.66 0.351463
Target:  5'- uGCACuGGCaGCUGGCgGCGCaccCGGGg -3'
miRNA:   3'- gCGUG-CCGcCGGCUGgCGCGa--GCUCg -5'
18960 5' -63 NC_004683.1 + 51543 0.66 0.392464
Target:  5'- aCGCACGGCaGGCgCGccGCCaGCGCacgcagaaCGAGg -3'
miRNA:   3'- -GCGUGCCG-CCG-GC--UGG-CGCGa-------GCUCg -5'
18960 5' -63 NC_004683.1 + 19215 0.66 0.389918
Target:  5'- aGUACgaaucccuGGUGGCCGccGCCgggucgaacgcgguGCGCgUCGAGCu -3'
miRNA:   3'- gCGUG--------CCGCCGGC--UGG--------------CGCG-AGCUCG- -5'
18960 5' -63 NC_004683.1 + 8535 0.66 0.351463
Target:  5'- uGCAgGGCGGCC-ACCGCaC-CG-GCc -3'
miRNA:   3'- gCGUgCCGCCGGcUGGCGcGaGCuCG- -5'
18960 5' -63 NC_004683.1 + 26979 0.66 0.359416
Target:  5'- aGCGCcgGGCaGGCCGGCCaC-CUCG-GCa -3'
miRNA:   3'- gCGUG--CCG-CCGGCUGGcGcGAGCuCG- -5'
18960 5' -63 NC_004683.1 + 13464 0.66 0.359416
Target:  5'- gCGCAgGGUGGCggCGGCUuccaggGCGUgUCGGGCc -3'
miRNA:   3'- -GCGUgCCGCCG--GCUGG------CGCG-AGCUCG- -5'
18960 5' -63 NC_004683.1 + 26337 0.66 0.343636
Target:  5'- gCGCuguCGGCGGUgcgaGGCCGCGUU--GGCc -3'
miRNA:   3'- -GCGu--GCCGCCGg---CUGGCGCGAgcUCG- -5'
18960 5' -63 NC_004683.1 + 44428 0.66 0.392464
Target:  5'- gGCcguCGGCuugacGGUCGACgGCaGCgCGAGCg -3'
miRNA:   3'- gCGu--GCCG-----CCGGCUGgCG-CGaGCUCG- -5'
18960 5' -63 NC_004683.1 + 12715 0.66 0.384019
Target:  5'- gGCAuccuCGGCGcGCgGGgCGCGUUCGGuccGCa -3'
miRNA:   3'- gCGU----GCCGC-CGgCUgGCGCGAGCU---CG- -5'
18960 5' -63 NC_004683.1 + 16397 0.66 0.383181
Target:  5'- gCGCGCcuGGUucGGaucgaucCUGACCGCGaUCGAGCg -3'
miRNA:   3'- -GCGUG--CCG--CC-------GGCUGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 55752 0.66 0.359416
Target:  5'- aCGaCAUGGCcgcagaccacGCCGACCagauCGCUCGGGUc -3'
miRNA:   3'- -GC-GUGCCGc---------CGGCUGGc---GCGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 46836 0.66 0.375695
Target:  5'- cCGCugGccaCGGUC-ACCGCG-UCGGGCa -3'
miRNA:   3'- -GCGugCc--GCCGGcUGGCGCgAGCUCG- -5'
18960 5' -63 NC_004683.1 + 557 0.66 0.343636
Target:  5'- gGCcccgaGGUGGCCGACCuguGCGaCUUG-GCg -3'
miRNA:   3'- gCGug---CCGCCGGCUGG---CGC-GAGCuCG- -5'
18960 5' -63 NC_004683.1 + 46398 0.66 0.343636
Target:  5'- cCGCACGuCGGgCacACCGC-CUCGGGCc -3'
miRNA:   3'- -GCGUGCcGCCgGc-UGGCGcGAGCUCG- -5'
18960 5' -63 NC_004683.1 + 3435 0.66 0.375695
Target:  5'- aGgAC-GCGGCCGAcauccagaagguCCGCGC-CGAGa -3'
miRNA:   3'- gCgUGcCGCCGGCU------------GGCGCGaGCUCg -5'
18960 5' -63 NC_004683.1 + 24514 0.66 0.343636
Target:  5'- gCGCuCGGUGGCCGGCgGCuuggucccGC-CGuAGCc -3'
miRNA:   3'- -GCGuGCCGCCGGCUGgCG--------CGaGC-UCG- -5'
18960 5' -63 NC_004683.1 + 54150 0.66 0.381509
Target:  5'- aCGC-CGaGCGGCCaaaggucaacGGCCGCGCgcucaucaaggccaUCGcGCa -3'
miRNA:   3'- -GCGuGC-CGCCGG----------CUGGCGCG--------------AGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.