miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 10710 0.67 0.178531
Target:  5'- gGGCuGCgUGGGUcacugucugguauCGGCGCGGCggGCCAAg -3'
miRNA:   3'- -CCGcUGgGCCCG-------------GCCGCGCCG--UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 24554 0.68 0.176296
Target:  5'- gGGCgccgGAUCCGGGCgCGGUguagauccagaucuuGCGGCGCUc- -3'
miRNA:   3'- -CCG----CUGGGCCCG-GCCG---------------CGCCGUGGuu -5'
18962 3' -66.6 NC_004683.1 + 23070 0.68 0.174525
Target:  5'- cGGCGGCCUGGugcucaCCGGCGCgcucucgugGGCguucGCCAGc -3'
miRNA:   3'- -CCGCUGGGCCc-----GGCCGCG---------CCG----UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 1743 0.68 0.170168
Target:  5'- cGGCGACgaGGuGacaaaCGGCGCGGgCAUCAAc -3'
miRNA:   3'- -CCGCUGggCC-Cg----GCCGCGCC-GUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 26535 0.68 0.169737
Target:  5'- gGGCGGCCUGGaucGCggugugcacugCGGCcaacucgGCGGCACCGg -3'
miRNA:   3'- -CCGCUGGGCC---CG-----------GCCG-------CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 9225 0.68 0.161333
Target:  5'- cGGCGGuCCCGccugggacgcgcuGGCCGGCGaCGGC-UCGu -3'
miRNA:   3'- -CCGCU-GGGC-------------CCGGCCGC-GCCGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 53689 0.68 0.153698
Target:  5'- cGCGACgCUGGGCaUGuGUGCGGCcCCAc -3'
miRNA:   3'- cCGCUG-GGCCCG-GC-CGCGCCGuGGUu -5'
18962 3' -66.6 NC_004683.1 + 19830 0.68 0.153306
Target:  5'- cGCaGGCCaucuucgCGGGuuGGCGCGGUucaGCCAGc -3'
miRNA:   3'- cCG-CUGG-------GCCCggCCGCGCCG---UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 14520 0.69 0.146017
Target:  5'- cGGCGACCUGGGCgagaacUGGCcGCuGUACUAc -3'
miRNA:   3'- -CCGCUGGGCCCG------GCCG-CGcCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 44287 0.69 0.146017
Target:  5'- cGGCGAUCCGcGCCGacgauCGCccgGGCACCGAc -3'
miRNA:   3'- -CCGCUGGGCcCGGCc----GCG---CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 1186 0.69 0.146017
Target:  5'- aGC-ACCuCGGaGUCGGCGUGGCAuCCGAc -3'
miRNA:   3'- cCGcUGG-GCC-CGGCCGCGCCGU-GGUU- -5'
18962 3' -66.6 NC_004683.1 + 26126 0.69 0.142309
Target:  5'- cGGCGAUCCugucaucgGGuaucGCCGGCGCGGCGg--- -3'
miRNA:   3'- -CCGCUGGG--------CC----CGGCCGCGCCGUgguu -5'
18962 3' -66.6 NC_004683.1 + 21567 0.69 0.138687
Target:  5'- gGGCGGCggCgGuGGCgGGCGCGGCAUgAu -3'
miRNA:   3'- -CCGCUG--GgC-CCGgCCGCGCCGUGgUu -5'
18962 3' -66.6 NC_004683.1 + 56259 0.69 0.138687
Target:  5'- -aCGAUgCGGGUgGGCGCGGUGgCCAGc -3'
miRNA:   3'- ccGCUGgGCCCGgCCGCGCCGU-GGUU- -5'
18962 3' -66.6 NC_004683.1 + 43139 0.69 0.138687
Target:  5'- uGGCGAagaUCGGGCCGGCuGUcgGGUGCUGAc -3'
miRNA:   3'- -CCGCUg--GGCCCGGCCG-CG--CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 927 0.69 0.129663
Target:  5'- aGGCGuGCCCGgauGGCCaGCGCGugaucuucaaggcgcGCACCAAc -3'
miRNA:   3'- -CCGC-UGGGC---CCGGcCGCGC---------------CGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 31895 0.69 0.128324
Target:  5'- cGuCGGCUCGGGCCGGUGCa--GCCAGc -3'
miRNA:   3'- cC-GCUGGGCCCGGCCGCGccgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 12249 0.69 0.127991
Target:  5'- cGGCGugccgauGCCCGGcGCUGGUGgCGGCAUa-- -3'
miRNA:   3'- -CCGC-------UGGGCC-CGGCCGC-GCCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 12142 0.69 0.125032
Target:  5'- gGGCGGCagGGGgUGGCGgGGgGCCAGc -3'
miRNA:   3'- -CCGCUGggCCCgGCCGCgCCgUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 18898 0.7 0.121818
Target:  5'- aGGCGGCCCGGGaguuCGUGcGCACCGu -3'
miRNA:   3'- -CCGCUGGGCCCggccGCGC-CGUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.