miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18966 5' -48.7 NC_004683.1 + 39955 0.66 0.971641
Target:  5'- --cCGCAGcg--CAUCCGCcgucucGGGAAUCg -3'
miRNA:   3'- acaGCGUCuaaaGUAGGCG------CUCUUAG- -5'
18966 5' -48.7 NC_004683.1 + 41713 0.66 0.968337
Target:  5'- -aUCGCGGuggUCAccucgCCGCGAGAc-- -3'
miRNA:   3'- acAGCGUCuaaAGUa----GGCGCUCUuag -5'
18966 5' -48.7 NC_004683.1 + 38521 0.66 0.968337
Target:  5'- -aUCGCGGAgaUCGUuCCGCGGucuGUCu -3'
miRNA:   3'- acAGCGUCUaaAGUA-GGCGCUcu-UAG- -5'
18966 5' -48.7 NC_004683.1 + 10769 0.66 0.95972
Target:  5'- cGUCgGCGGGUUcgcaggcUCGUCCGCGcuucugcggcucGGAUCa -3'
miRNA:   3'- aCAG-CGUCUAA-------AGUAGGCGCu-----------CUUAG- -5'
18966 5' -48.7 NC_004683.1 + 8585 0.67 0.942697
Target:  5'- uUGUCGaCGG---UCGUguagccaccagCCGCGGGAGUCg -3'
miRNA:   3'- -ACAGC-GUCuaaAGUA-----------GGCGCUCUUAG- -5'
18966 5' -48.7 NC_004683.1 + 50834 0.67 0.937398
Target:  5'- gUGUCGC-GAg--CcgUCGCGAGAccGUCg -3'
miRNA:   3'- -ACAGCGuCUaaaGuaGGCGCUCU--UAG- -5'
18966 5' -48.7 NC_004683.1 + 26254 0.68 0.919678
Target:  5'- gUGUgGCGccggUUCAUgaUCGCGAGGAUCa -3'
miRNA:   3'- -ACAgCGUcua-AAGUA--GGCGCUCUUAG- -5'
18966 5' -48.7 NC_004683.1 + 26931 0.69 0.876122
Target:  5'- cGUCGguGAgUUCcUCCGCaggcgcgaGAGggUCc -3'
miRNA:   3'- aCAGCguCUaAAGuAGGCG--------CUCuuAG- -5'
18966 5' -48.7 NC_004683.1 + 4177 0.71 0.812905
Target:  5'- cGUCGCGGAUgaUCuugCCGUGGGGGa- -3'
miRNA:   3'- aCAGCGUCUAa-AGua-GGCGCUCUUag -5'
18966 5' -48.7 NC_004683.1 + 48701 0.74 0.648746
Target:  5'- gGUCGCGGA----GUCCGCGGGcccAGUCg -3'
miRNA:   3'- aCAGCGUCUaaagUAGGCGCUC---UUAG- -5'
18966 5' -48.7 NC_004683.1 + 53818 1.11 0.00377
Target:  5'- cUGUCGCAGAUUUCAUCCGCGAGAAUCu -3'
miRNA:   3'- -ACAGCGUCUAAAGUAGGCGCUCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.