Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18967 | 3' | -50.5 | NC_004683.1 | + | 24398 | 0.66 | 0.932775 |
Target: 5'- cGA-CGAGGccaccgcggcGAUCGUCGgcuACGGCGGGa -3' miRNA: 3'- aCUaGCUUCa---------CUAGUAGC---UGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 29703 | 0.66 | 0.943319 |
Target: 5'- -cGUCGAAGUcGA-CAaCGACGGCGu- -3' miRNA: 3'- acUAGCUUCA-CUaGUaGCUGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 52892 | 0.66 | 0.943319 |
Target: 5'- aGAUCGcugaugcugaacGAGUacUCGUCGGCcucGGCGAGc -3' miRNA: 3'- aCUAGC------------UUCAcuAGUAGCUG---CCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 14337 | 0.66 | 0.943319 |
Target: 5'- cGAUCGAGGcGAUgAUgaGGCGGCa-- -3' miRNA: 3'- aCUAGCUUCaCUAgUAg-CUGCCGcuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 32443 | 0.66 | 0.943319 |
Target: 5'- ---cCGGAGUcccuGGUCAUCG-CGGCGcAGa -3' miRNA: 3'- acuaGCUUCA----CUAGUAGCuGCCGC-UC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 51385 | 0.66 | 0.938191 |
Target: 5'- -cGUUGAGGU--UCAUCGGCGGCc-- -3' miRNA: 3'- acUAGCUUCAcuAGUAGCUGCCGcuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 263 | 0.66 | 0.927069 |
Target: 5'- cGG-CGggGcUGGUCG-CGACGGUGGu -3' miRNA: 3'- aCUaGCuuC-ACUAGUaGCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 26867 | 0.66 | 0.948161 |
Target: 5'- gGAUCGAGGuUGAacUCGaugcugaCGACGGCGu- -3' miRNA: 3'- aCUAGCUUC-ACU--AGUa------GCUGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 1406 | 0.66 | 0.948161 |
Target: 5'- cGAUCGAGGacgccccgcUGAUCucgaaaGACGGCuGGGc -3' miRNA: 3'- aCUAGCUUC---------ACUAGuag---CUGCCG-CUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 20085 | 0.66 | 0.938191 |
Target: 5'- -aGUCGAuGGUGGccucggcggUAUCGACGGCGGc -3' miRNA: 3'- acUAGCU-UCACUa--------GUAGCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 49123 | 0.67 | 0.921074 |
Target: 5'- uUGGUCGAcGUGcAUCAgUCGGCGccguucugcugcGCGAGc -3' miRNA: 3'- -ACUAGCUuCAC-UAGU-AGCUGC------------CGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 7817 | 0.67 | 0.914789 |
Target: 5'- aUGGUaagCGAaccguGGaGAUCGaCGACGGCGAGu -3' miRNA: 3'- -ACUA---GCU-----UCaCUAGUaGCUGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 36112 | 0.67 | 0.914789 |
Target: 5'- aGGUCG-GGcGAucUCGUCGAuCGGCGAu -3' miRNA: 3'- aCUAGCuUCaCU--AGUAGCU-GCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 46600 | 0.67 | 0.901358 |
Target: 5'- cGGUCGAGGg---CcgCGACGGCaAGg -3' miRNA: 3'- aCUAGCUUCacuaGuaGCUGCCGcUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 2669 | 0.67 | 0.901358 |
Target: 5'- --cUCGuacuGGacGAUCGUUGACGGUGAGu -3' miRNA: 3'- acuAGCu---UCa-CUAGUAGCUGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 21416 | 0.67 | 0.894217 |
Target: 5'- cGAUCGGGaUGGUCAcCGACaGCGGc -3' miRNA: 3'- aCUAGCUUcACUAGUaGCUGcCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 49785 | 0.67 | 0.894217 |
Target: 5'- cGAUCGcuG-GGUCGUUGACGaCGAGc -3' miRNA: 3'- aCUAGCuuCaCUAGUAGCUGCcGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 29157 | 0.67 | 0.921074 |
Target: 5'- cGAUCuGGGUGAugUCAUCGcuaccACGGCGc- -3' miRNA: 3'- aCUAGcUUCACU--AGUAGC-----UGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 44672 | 0.68 | 0.854459 |
Target: 5'- -cGUCGAAcGUGAg-GUCGGCGGCGc- -3' miRNA: 3'- acUAGCUU-CACUagUAGCUGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 41831 | 0.68 | 0.874363 |
Target: 5'- gGuAUCGAcgcgcgGGUaGGUCAUCGgcucgggcaggucucGCGGCGAGg -3' miRNA: 3'- aC-UAGCU------UCA-CUAGUAGC---------------UGCCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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