miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18967 3' -50.5 NC_004683.1 + 263 0.66 0.927069
Target:  5'- cGG-CGggGcUGGUCG-CGACGGUGGu -3'
miRNA:   3'- aCUaGCuuC-ACUAGUaGCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 25163 0.68 0.871148
Target:  5'- cUGcUCGGcucGGUCAUCGGCGGCGuGc -3'
miRNA:   3'- -ACuAGCUucaCUAGUAGCUGCCGCuC- -5'
18967 3' -50.5 NC_004683.1 + 15556 0.68 0.874363
Target:  5'- aGGUUGAgccguacuacgucaaGGUGGcgAUCGACGGCGGc -3'
miRNA:   3'- aCUAGCU---------------UCACUagUAGCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 21416 0.67 0.894217
Target:  5'- cGAUCGGGaUGGUCAcCGACaGCGGc -3'
miRNA:   3'- aCUAGCUUcACUAGUaGCUGcCGCUc -5'
18967 3' -50.5 NC_004683.1 + 2669 0.67 0.901358
Target:  5'- --cUCGuacuGGacGAUCGUUGACGGUGAGu -3'
miRNA:   3'- acuAGCu---UCa-CUAGUAGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 46600 0.67 0.901358
Target:  5'- cGGUCGAGGg---CcgCGACGGCaAGg -3'
miRNA:   3'- aCUAGCUUCacuaGuaGCUGCCGcUC- -5'
18967 3' -50.5 NC_004683.1 + 36112 0.67 0.914789
Target:  5'- aGGUCG-GGcGAucUCGUCGAuCGGCGAu -3'
miRNA:   3'- aCUAGCuUCaCU--AGUAGCU-GCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 7817 0.67 0.914789
Target:  5'- aUGGUaagCGAaccguGGaGAUCGaCGACGGCGAGu -3'
miRNA:   3'- -ACUA---GCU-----UCaCUAGUaGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 49123 0.67 0.921074
Target:  5'- uUGGUCGAcGUGcAUCAgUCGGCGccguucugcugcGCGAGc -3'
miRNA:   3'- -ACUAGCUuCAC-UAGU-AGCUGC------------CGCUC- -5'
18967 3' -50.5 NC_004683.1 + 34576 0.68 0.86293
Target:  5'- ---cCGGAGuUGAggcUGUCGACGGUGAGa -3'
miRNA:   3'- acuaGCUUC-ACUa--GUAGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 21549 0.68 0.86293
Target:  5'- -cAUCGAcGUGAUCcugcugggCGGCGGCGGu -3'
miRNA:   3'- acUAGCUuCACUAGua------GCUGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 3165 0.68 0.86293
Target:  5'- aGAUCGAcuucaagaacGUGcgCggCGGCGGUGAGa -3'
miRNA:   3'- aCUAGCUu---------CACuaGuaGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 48557 0.87 0.099604
Target:  5'- -cGUCGGgcugcacugGGUGAUCGUCGGCGGCGAGa -3'
miRNA:   3'- acUAGCU---------UCACUAGUAGCUGCCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 33884 0.75 0.493407
Target:  5'- cUGGUCGAAuGUGAUCAgccucCGuGCGGCGAu -3'
miRNA:   3'- -ACUAGCUU-CACUAGUa----GC-UGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 8078 0.72 0.681725
Target:  5'- ---gUGAGGUGAcccgCAUCGACGGCGc- -3'
miRNA:   3'- acuaGCUUCACUa---GUAGCUGCCGCuc -5'
18967 3' -50.5 NC_004683.1 + 22918 0.7 0.798841
Target:  5'- -uGUCGcuGGUGAUCAaCGACGGCa-- -3'
miRNA:   3'- acUAGCu-UCACUAGUaGCUGCCGcuc -5'
18967 3' -50.5 NC_004683.1 + 41711 0.7 0.798841
Target:  5'- aGAUCGcGGUGGUCAccUCG-CcGCGAGa -3'
miRNA:   3'- aCUAGCuUCACUAGU--AGCuGcCGCUC- -5'
18967 3' -50.5 NC_004683.1 + 2719 0.69 0.812494
Target:  5'- gGGUCGAcGUGGUgGUCGaggaacggauggugcGCGGCGGc -3'
miRNA:   3'- aCUAGCUuCACUAgUAGC---------------UGCCGCUc -5'
18967 3' -50.5 NC_004683.1 + 666 0.69 0.827619
Target:  5'- cGuUCGAGuucGUGGUCAUCG-CGGCGcGg -3'
miRNA:   3'- aCuAGCUU---CACUAGUAGCuGCCGCuC- -5'
18967 3' -50.5 NC_004683.1 + 49526 0.69 0.835887
Target:  5'- aGGUCGGauggaacGGUG-UCAgCGGCGGCGGa -3'
miRNA:   3'- aCUAGCU-------UCACuAGUaGCUGCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.