Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18967 | 5' | -55.2 | NC_004683.1 | + | 51297 | 0.66 | 0.770101 |
Target: 5'- aGCCCGUucGACGcCACAgGGgCGC-UCGc -3' miRNA: 3'- -CGGGCG--CUGCaGUGUgCCaGUGaAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 54903 | 0.66 | 0.767096 |
Target: 5'- gGCUCaaCGACGUCACcaaggucuacgacgACGGUCgccACUUCGc -3' miRNA: 3'- -CGGGc-GCUGCAGUG--------------UGCCAG---UGAAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 1976 | 0.66 | 0.760036 |
Target: 5'- cGCCCacgcaucgGCGAgGUCGCgcaucuugccuGCGGUCACcgaaUCGg -3' miRNA: 3'- -CGGG--------CGCUgCAGUG-----------UGCCAGUGa---AGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 45166 | 0.66 | 0.760036 |
Target: 5'- gGCCgaccgcaGCGACGUUGCcCGGUCG-UUCGg -3' miRNA: 3'- -CGGg------CGCUGCAGUGuGCCAGUgAAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 13950 | 0.66 | 0.738496 |
Target: 5'- uGCCgCGUGAUGUCagcgccgGCGCGGUC-CU-CGg -3' miRNA: 3'- -CGG-GCGCUGCAG-------UGUGCCAGuGAaGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 4224 | 0.66 | 0.729117 |
Target: 5'- gGCCgGUGACGUgGC-CGGccuacgccgaCACUUCAg -3' miRNA: 3'- -CGGgCGCUGCAgUGuGCCa---------GUGAAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 42702 | 0.67 | 0.708012 |
Target: 5'- -gUCGCgGGCGUCGuCGCGGUCGCc--- -3' miRNA: 3'- cgGGCG-CUGCAGU-GUGCCAGUGaagu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 53212 | 0.67 | 0.697345 |
Target: 5'- --gCGCGaACGUCgACAUGGUCACcUCc -3' miRNA: 3'- cggGCGC-UGCAG-UGUGCCAGUGaAGu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 49274 | 0.67 | 0.697345 |
Target: 5'- uGCCCGaCGACGUC--GCGG-CACa--- -3' miRNA: 3'- -CGGGC-GCUGCAGugUGCCaGUGaagu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 5801 | 0.67 | 0.665017 |
Target: 5'- cGCCCugGCgGAUGUCuACGCGGUCuACgagCAg -3' miRNA: 3'- -CGGG--CG-CUGCAG-UGUGCCAG-UGaa-GU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 44372 | 0.67 | 0.665017 |
Target: 5'- uGCCCggGCGAuCGUCgGCGCGGaUCGCcgcgUCGa -3' miRNA: 3'- -CGGG--CGCU-GCAG-UGUGCC-AGUGa---AGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 6619 | 0.68 | 0.654167 |
Target: 5'- cGCCUGUGugGUUgcggGCGCGG--GCUUCu -3' miRNA: 3'- -CGGGCGCugCAG----UGUGCCagUGAAGu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 33415 | 0.68 | 0.643296 |
Target: 5'- gGCCCGCGACG-CGCucgcccagauccGCGGcCAggUCGc -3' miRNA: 3'- -CGGGCGCUGCaGUG------------UGCCaGUgaAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 47747 | 0.68 | 0.632416 |
Target: 5'- cGCCaGCGACGUCACACG--CACcgUUCc -3' miRNA: 3'- -CGGgCGCUGCAGUGUGCcaGUG--AAGu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 33834 | 0.68 | 0.610664 |
Target: 5'- uGCuCUGCGAgcUCGCGCGGUCGCc--- -3' miRNA: 3'- -CG-GGCGCUgcAGUGUGCCAGUGaagu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 24336 | 0.69 | 0.60415 |
Target: 5'- aCCCGCGAgaugcaacgccgacuCGUCGCcgcaggccacGCGGUCGCgaUCAc -3' miRNA: 3'- cGGGCGCU---------------GCAGUG----------UGCCAGUGa-AGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 42637 | 0.69 | 0.599811 |
Target: 5'- cGCCCGCGACGagAUcgGCGGcCGCc--- -3' miRNA: 3'- -CGGGCGCUGCagUG--UGCCaGUGaagu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 48326 | 0.69 | 0.588986 |
Target: 5'- cGCCgGCGGCGUCGCucauuuCGG-CGCg--- -3' miRNA: 3'- -CGGgCGCUGCAGUGu-----GCCaGUGaagu -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 47312 | 0.69 | 0.577118 |
Target: 5'- aGCCCGCGAUgGUCGaGCaGGUCGCcguggugUUCAc -3' miRNA: 3'- -CGGGCGCUG-CAGUgUG-CCAGUG-------AAGU- -5' |
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18967 | 5' | -55.2 | NC_004683.1 | + | 47907 | 0.69 | 0.545055 |
Target: 5'- uGCCCGUGugGUCGCucauCGGUUcuccuguGCUg-- -3' miRNA: 3'- -CGGGCGCugCAGUGu---GCCAG-------UGAagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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