miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18969 3' -55.8 NC_004683.1 + 56856 0.67 0.632416
Target:  5'- gACCucGGUa-GCGGCuGCGGUCGUCGu -3'
miRNA:   3'- -UGGuuCCAgaUGCUGcUGCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 6146 0.68 0.610664
Target:  5'- uGCCGAuacGGUCgGCGAUGACGuaguucuggaaGUUGCCGu -3'
miRNA:   3'- -UGGUU---CCAGaUGCUGCUGC-----------CAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 9211 0.68 0.599811
Target:  5'- gGCUugAAGGUCaguuCGGCGGCGGU-GCCu -3'
miRNA:   3'- -UGG--UUCCAGau--GCUGCUGCCAgCGGu -5'
18969 3' -55.8 NC_004683.1 + 21339 0.68 0.57389
Target:  5'- uACCGAGGUCggugccaaacaGGcCGGCGGUaGCCAg -3'
miRNA:   3'- -UGGUUCCAGaug--------CU-GCUGCCAgCGGU- -5'
18969 3' -55.8 NC_004683.1 + 56276 0.69 0.504291
Target:  5'- gGCCGAGGUagaagcugACGAUGcgggugggcGCGGUgGCCAg -3'
miRNA:   3'- -UGGUUCCAga------UGCUGC---------UGCCAgCGGU- -5'
18969 3' -55.8 NC_004683.1 + 5334 0.71 0.39671
Target:  5'- gACCAggcgcgcAGGUaCgccgGCGACGACG-UCGCCAg -3'
miRNA:   3'- -UGGU-------UCCA-Ga---UGCUGCUGCcAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 24436 0.72 0.379815
Target:  5'- gACCGcguGGcCUGCGGCGACGaGUCGgCGu -3'
miRNA:   3'- -UGGUu--CCaGAUGCUGCUGC-CAGCgGU- -5'
18969 3' -55.8 NC_004683.1 + 36568 0.72 0.36256
Target:  5'- uCCuuuuGGUCUGCuGACGAacucuCGGUUGCCAg -3'
miRNA:   3'- uGGuu--CCAGAUG-CUGCU-----GCCAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 51326 0.73 0.337714
Target:  5'- aGCCGAGGgccuUCUGCGACGGC--UUGCCGa -3'
miRNA:   3'- -UGGUUCC----AGAUGCUGCUGccAGCGGU- -5'
18969 3' -55.8 NC_004683.1 + 24015 0.66 0.718606
Target:  5'- gGCCAGGGUgacCggccCGACGAugccguCGGcCGCCAc -3'
miRNA:   3'- -UGGUUCCA---Gau--GCUGCU------GCCaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.