Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18969 | 3' | -55.8 | NC_004683.1 | + | 54916 | 1.08 | 0.00125 |
Target: 5'- cACCAAGGUCUACGACGACGGUCGCCAc -3' miRNA: 3'- -UGGUUCCAGAUGCUGCUGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 25566 | 0.66 | 0.729117 |
Target: 5'- gGCCGcGGUCggcaACGgcACGGCGGcCGUCGc -3' miRNA: 3'- -UGGUuCCAGa---UGC--UGCUGCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 39707 | 0.66 | 0.718606 |
Target: 5'- -aCAAGGUCUACGGCagccaaucGACGGcgaagaaacgCGCUg -3' miRNA: 3'- ugGUUCCAGAUGCUG--------CUGCCa---------GCGGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 5974 | 0.66 | 0.708012 |
Target: 5'- gGCCGguGGGUgagGCGagGCGAUGGaCGCCAa -3' miRNA: 3'- -UGGU--UCCAga-UGC--UGCUGCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 5360 | 0.66 | 0.708012 |
Target: 5'- gACCAAGGcCgACGGCGGCuaccuGGU-GCCGu -3' miRNA: 3'- -UGGUUCCaGaUGCUGCUG-----CCAgCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 24113 | 0.66 | 0.686616 |
Target: 5'- -gCAAGGUCgACGACGGCaGcCGCg- -3' miRNA: 3'- ugGUUCCAGaUGCUGCUGcCaGCGgu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 3864 | 0.67 | 0.675837 |
Target: 5'- cCCAAGGUgcaguuCGACcACGGcCGCCAc -3' miRNA: 3'- uGGUUCCAgau---GCUGcUGCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 53944 | 0.67 | 0.674756 |
Target: 5'- gGCCGAcgaggccGGUCUGcCGAguuuCGACG-UCGCCAa -3' miRNA: 3'- -UGGUU-------CCAGAU-GCU----GCUGCcAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 31291 | 0.67 | 0.674756 |
Target: 5'- cACCGGGGguugugcagCUGCGggccguggcggugGCGGCGauGUCGCCGu -3' miRNA: 3'- -UGGUUCCa--------GAUGC-------------UGCUGC--CAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 2791 | 0.67 | 0.633504 |
Target: 5'- gGCgCAAGGUCgguuaccucuacacCGAgGGUGGUCGCCAg -3' miRNA: 3'- -UG-GUUCCAGau------------GCUgCUGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 20302 | 0.71 | 0.415935 |
Target: 5'- gGCCGGGG-CgGCGACGGCGGcagCGCg- -3' miRNA: 3'- -UGGUUCCaGaUGCUGCUGCCa--GCGgu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 55871 | 0.7 | 0.4839 |
Target: 5'- gGCCAAcucGUCUACgGGCG-CGcGUCGCCAc -3' miRNA: 3'- -UGGUUc--CAGAUG-CUGCuGC-CAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 7294 | 0.68 | 0.567447 |
Target: 5'- cACCGAGGUCUggaagcucaccGCGcccccaaccGCGGCGGUgcuggcaGCCAa -3' miRNA: 3'- -UGGUUCCAGA-----------UGC---------UGCUGCCAg------CGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 32856 | 0.68 | 0.567447 |
Target: 5'- gGCCAGGGcgagCUcccacGCGAuCGcguaGCGGUCGCCu -3' miRNA: 3'- -UGGUUCCa---GA-----UGCU-GC----UGCCAGCGGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 26868 | 0.68 | 0.578195 |
Target: 5'- gAUCGAGGUUgaacucgaUGCuGACGACGG-CGUCAu -3' miRNA: 3'- -UGGUUCCAG--------AUG-CUGCUGCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 54468 | 0.67 | 0.621536 |
Target: 5'- aACCAAGGUCgGCGACGGCuacagcaUCGaCCu -3' miRNA: 3'- -UGGUUCCAGaUGCUGCUGcc-----AGC-GGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 24015 | 0.66 | 0.718606 |
Target: 5'- gGCCAGGGUgacCggccCGACGAugccguCGGcCGCCAc -3' miRNA: 3'- -UGGUUCCA---Gau--GCUGCU------GCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 36568 | 0.72 | 0.36256 |
Target: 5'- uCCuuuuGGUCUGCuGACGAacucuCGGUUGCCAg -3' miRNA: 3'- uGGuu--CCAGAUG-CUGCU-----GCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 24436 | 0.72 | 0.379815 |
Target: 5'- gACCGcguGGcCUGCGGCGACGaGUCGgCGu -3' miRNA: 3'- -UGGUu--CCaGAUGCUGCUGC-CAGCgGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 5334 | 0.71 | 0.39671 |
Target: 5'- gACCAggcgcgcAGGUaCgccgGCGACGACG-UCGCCAg -3' miRNA: 3'- -UGGU-------UCCA-Ga---UGCUGCUGCcAGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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