Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18969 | 3' | -55.8 | NC_004683.1 | + | 54916 | 1.08 | 0.00125 |
Target: 5'- cACCAAGGUCUACGACGACGGUCGCCAc -3' miRNA: 3'- -UGGUUCCAGAUGCUGCUGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 51326 | 0.73 | 0.337714 |
Target: 5'- aGCCGAGGgccuUCUGCGACGGC--UUGCCGa -3' miRNA: 3'- -UGGUUCC----AGAUGCUGCUGccAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 36568 | 0.72 | 0.36256 |
Target: 5'- uCCuuuuGGUCUGCuGACGAacucuCGGUUGCCAg -3' miRNA: 3'- uGGuu--CCAGAUG-CUGCU-----GCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 24436 | 0.72 | 0.379815 |
Target: 5'- gACCGcguGGcCUGCGGCGACGaGUCGgCGu -3' miRNA: 3'- -UGGUu--CCaGAUGCUGCUGC-CAGCgGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 5334 | 0.71 | 0.39671 |
Target: 5'- gACCAggcgcgcAGGUaCgccgGCGACGACG-UCGCCAg -3' miRNA: 3'- -UGGU-------UCCA-Ga---UGCUGCUGCcAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 20302 | 0.71 | 0.415935 |
Target: 5'- gGCCGGGG-CgGCGACGGCGGcagCGCg- -3' miRNA: 3'- -UGGUUCCaGaUGCUGCUGCCa--GCGgu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 55871 | 0.7 | 0.4839 |
Target: 5'- gGCCAAcucGUCUACgGGCG-CGcGUCGCCAc -3' miRNA: 3'- -UGGUUc--CAGAUG-CUGCuGC-CAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 56276 | 0.69 | 0.504291 |
Target: 5'- gGCCGAGGUagaagcugACGAUGcgggugggcGCGGUgGCCAg -3' miRNA: 3'- -UGGUUCCAga------UGCUGC---------UGCCAgCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 7294 | 0.68 | 0.567447 |
Target: 5'- cACCGAGGUCUggaagcucaccGCGcccccaaccGCGGCGGUgcuggcaGCCAa -3' miRNA: 3'- -UGGUUCCAGA-----------UGC---------UGCUGCCAg------CGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 32856 | 0.68 | 0.567447 |
Target: 5'- gGCCAGGGcgagCUcccacGCGAuCGcguaGCGGUCGCCu -3' miRNA: 3'- -UGGUUCCa---GA-----UGCU-GC----UGCCAGCGGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 21339 | 0.68 | 0.57389 |
Target: 5'- uACCGAGGUCggugccaaacaGGcCGGCGGUaGCCAg -3' miRNA: 3'- -UGGUUCCAGaug--------CU-GCUGCCAgCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 26868 | 0.68 | 0.578195 |
Target: 5'- gAUCGAGGUUgaacucgaUGCuGACGACGG-CGUCAu -3' miRNA: 3'- -UGGUUCCAG--------AUG-CUGCUGCCaGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 9211 | 0.68 | 0.599811 |
Target: 5'- gGCUugAAGGUCaguuCGGCGGCGGU-GCCu -3' miRNA: 3'- -UGG--UUCCAGau--GCUGCUGCCAgCGGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 6146 | 0.68 | 0.610664 |
Target: 5'- uGCCGAuacGGUCgGCGAUGACGuaguucuggaaGUUGCCGu -3' miRNA: 3'- -UGGUU---CCAGaUGCUGCUGC-----------CAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 54468 | 0.67 | 0.621536 |
Target: 5'- aACCAAGGUCgGCGACGGCuacagcaUCGaCCu -3' miRNA: 3'- -UGGUUCCAGaUGCUGCUGcc-----AGC-GGu -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 16761 | 0.67 | 0.632416 |
Target: 5'- cCCGAGaUCUGCGAgcgguccuUGACGGUCaCCAc -3' miRNA: 3'- uGGUUCcAGAUGCU--------GCUGCCAGcGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 56856 | 0.67 | 0.632416 |
Target: 5'- gACCucGGUa-GCGGCuGCGGUCGUCGu -3' miRNA: 3'- -UGGuuCCAgaUGCUGcUGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 2791 | 0.67 | 0.633504 |
Target: 5'- gGCgCAAGGUCgguuaccucuacacCGAgGGUGGUCGCCAg -3' miRNA: 3'- -UG-GUUCCAGau------------GCUgCUGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 42712 | 0.67 | 0.643296 |
Target: 5'- cGCCGAucucGUCgcggGCGuCGucGCGGUCGCCGa -3' miRNA: 3'- -UGGUUc---CAGa---UGCuGC--UGCCAGCGGU- -5' |
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18969 | 3' | -55.8 | NC_004683.1 | + | 5925 | 0.67 | 0.654166 |
Target: 5'- aGCCAGGcGcCUugG-CGGCGGU-GCCGc -3' miRNA: 3'- -UGGUUC-CaGAugCuGCUGCCAgCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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