miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18969 5' -61.3 NC_004683.1 + 49489 0.66 0.389051
Target:  5'- cCCGGUGCgCCGCuGCcugGCggGAUCUu -3'
miRNA:   3'- uGGCCGCG-GGCGcCGa--CGuaCUAGAu -5'
18969 5' -61.3 NC_004683.1 + 21819 0.66 0.380341
Target:  5'- cACCGGUcuGCCCGCGgGCUGgGuUGAa--- -3'
miRNA:   3'- -UGGCCG--CGGGCGC-CGACgU-ACUagau -5'
18969 5' -61.3 NC_004683.1 + 28475 0.66 0.371763
Target:  5'- cGCCcGCGCCC-CGGCUGCGUc----- -3'
miRNA:   3'- -UGGcCGCGGGcGCCGACGUAcuagau -5'
18969 5' -61.3 NC_004683.1 + 51058 0.66 0.363318
Target:  5'- cUCGGCGCCUugGCGGCgggugcgGCcgGAgcgCUGu -3'
miRNA:   3'- uGGCCGCGGG--CGCCGa------CGuaCUa--GAU- -5'
18969 5' -61.3 NC_004683.1 + 43904 0.66 0.355006
Target:  5'- cCCGGCGCgCGUGGUcgagUGCcagcUGAUCa- -3'
miRNA:   3'- uGGCCGCGgGCGCCG----ACGu---ACUAGau -5'
18969 5' -61.3 NC_004683.1 + 31997 0.67 0.315485
Target:  5'- cGCgGGCGgCUgaggcgguGCGGCUGaCAUGGUCg- -3'
miRNA:   3'- -UGgCCGCgGG--------CGCCGAC-GUACUAGau -5'
18969 5' -61.3 NC_004683.1 + 21569 0.67 0.30799
Target:  5'- -gCGGCGgCgGUGGCgggcgcgGCAUGAUCa- -3'
miRNA:   3'- ugGCCGCgGgCGCCGa------CGUACUAGau -5'
18969 5' -61.3 NC_004683.1 + 42574 0.68 0.300632
Target:  5'- gGCCGaGCGCgCCGCGGCgGUcgGggCc- -3'
miRNA:   3'- -UGGC-CGCG-GGCGCCGaCGuaCuaGau -5'
18969 5' -61.3 NC_004683.1 + 12262 0.68 0.286326
Target:  5'- cCCGGCGCUgGUGGCgGCAUaGG-CUAc -3'
miRNA:   3'- uGGCCGCGGgCGCCGaCGUA-CUaGAU- -5'
18969 5' -61.3 NC_004683.1 + 3280 0.68 0.272562
Target:  5'- cACCGGCuG-CCGCGGCaaUGCGUG-UCUc -3'
miRNA:   3'- -UGGCCG-CgGGCGCCG--ACGUACuAGAu -5'
18969 5' -61.3 NC_004683.1 + 8485 0.69 0.259334
Target:  5'- gACCGGCacgacuCCCGCGGCUG-GUGG-CUAc -3'
miRNA:   3'- -UGGCCGc-----GGGCGCCGACgUACUaGAU- -5'
18969 5' -61.3 NC_004683.1 + 48102 0.69 0.222785
Target:  5'- gGCCGGCGCCaccucauCGGCUGCAgcaGUUUGu -3'
miRNA:   3'- -UGGCCGCGGgc-----GCCGACGUac-UAGAU- -5'
18969 5' -61.3 NC_004683.1 + 1446 0.7 0.217137
Target:  5'- aGCCgaGGCGCUCGCGGCcgaacucgGCggGAUCg- -3'
miRNA:   3'- -UGG--CCGCGGGCGCCGa-------CGuaCUAGau -5'
18969 5' -61.3 NC_004683.1 + 248 0.7 0.19071
Target:  5'- cGCCGcuGCuGCCCGCGGCgggGC-UGGUCg- -3'
miRNA:   3'- -UGGC--CG-CGGGCGCCGa--CGuACUAGau -5'
18969 5' -61.3 NC_004683.1 + 6625 0.71 0.171643
Target:  5'- gGCCGGCGCCUguGUGGUUGCggGcgCg- -3'
miRNA:   3'- -UGGCCGCGGG--CGCCGACGuaCuaGau -5'
18969 5' -61.3 NC_004683.1 + 43130 0.72 0.150216
Target:  5'- gACCGGCGU--GCGGCUGCGUGGc--- -3'
miRNA:   3'- -UGGCCGCGggCGCCGACGUACUagau -5'
18969 5' -61.3 NC_004683.1 + 30772 0.72 0.150216
Target:  5'- cACCGGCGCaCCGuCGGCUGCGc------ -3'
miRNA:   3'- -UGGCCGCG-GGC-GCCGACGUacuagau -5'
18969 5' -61.3 NC_004683.1 + 1578 0.74 0.108393
Target:  5'- cCCGGCgGCCCGCGGCgGCAacGUCg- -3'
miRNA:   3'- uGGCCG-CGGGCGCCGaCGUacUAGau -5'
18969 5' -61.3 NC_004683.1 + 21989 0.76 0.077683
Target:  5'- uGCUGGCGCgCGCGGCcaaGCAUGGuUCUAc -3'
miRNA:   3'- -UGGCCGCGgGCGCCGa--CGUACU-AGAU- -5'
18969 5' -61.3 NC_004683.1 + 54952 1.05 0.000413
Target:  5'- cACCGGCGCCCGCGGCUGCAUGAUCUAc -3'
miRNA:   3'- -UGGCCGCGGGCGCCGACGUACUAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.