miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18971 5' -54.6 NC_004683.1 + 45005 0.66 0.802679
Target:  5'- gGCag-GCGcUGGCCAcuggUGAACCGUCc -3'
miRNA:   3'- gCGagaUGCaGCCGGU----ACUUGGCAGc -5'
18971 5' -54.6 NC_004683.1 + 44337 0.66 0.793094
Target:  5'- gCGCUC-GCG-CuGCCGUcGACCGUCa -3'
miRNA:   3'- -GCGAGaUGCaGcCGGUAcUUGGCAGc -5'
18971 5' -54.6 NC_004683.1 + 26989 0.66 0.783344
Target:  5'- aCGCgaucaUCU-UGUCGGCCGaccucgccgaUGAcGCCGUCGu -3'
miRNA:   3'- -GCG-----AGAuGCAGCCGGU----------ACU-UGGCAGC- -5'
18971 5' -54.6 NC_004683.1 + 46633 0.66 0.773439
Target:  5'- cCGCUCgAUGcCGGCCcgGAuCCG-CGc -3'
miRNA:   3'- -GCGAGaUGCaGCCGGuaCUuGGCaGC- -5'
18971 5' -54.6 NC_004683.1 + 25467 0.67 0.742908
Target:  5'- -cCUCUACGUggUGGCCAccgcggcgcUG-GCCGUCGc -3'
miRNA:   3'- gcGAGAUGCA--GCCGGU---------ACuUGGCAGC- -5'
18971 5' -54.6 NC_004683.1 + 1237 0.67 0.742908
Target:  5'- cCGCaCUAUGUCGGCUAUccGGGCUG-CGc -3'
miRNA:   3'- -GCGaGAUGCAGCCGGUA--CUUGGCaGC- -5'
18971 5' -54.6 NC_004683.1 + 53306 0.67 0.700711
Target:  5'- uCGCagUACG-CGGUCAgGAACuCGUCGu -3'
miRNA:   3'- -GCGagAUGCaGCCGGUaCUUG-GCAGC- -5'
18971 5' -54.6 NC_004683.1 + 26543 0.68 0.68997
Target:  5'- gGCUCgGCGggCGGCC-UGGAUCG-CGg -3'
miRNA:   3'- gCGAGaUGCa-GCCGGuACUUGGCaGC- -5'
18971 5' -54.6 NC_004683.1 + 3375 0.68 0.679175
Target:  5'- uGCUgUGcCGUCGGCCA---GgCGUCGg -3'
miRNA:   3'- gCGAgAU-GCAGCCGGUacuUgGCAGC- -5'
18971 5' -54.6 NC_004683.1 + 396 0.68 0.679175
Target:  5'- gCGC-CUGC--UGGCCGaGAACCGUCu -3'
miRNA:   3'- -GCGaGAUGcaGCCGGUaCUUGGCAGc -5'
18971 5' -54.6 NC_004683.1 + 24029 0.68 0.678092
Target:  5'- uGCUCgACGagcUUGGCCAgggUGAccggcccgacgauGCCGUCGg -3'
miRNA:   3'- gCGAGaUGC---AGCCGGU---ACU-------------UGGCAGC- -5'
18971 5' -54.6 NC_004683.1 + 44720 0.69 0.624745
Target:  5'- gCGCUCaUGCGUUGGgcCCGUcGAACaUGUCGa -3'
miRNA:   3'- -GCGAG-AUGCAGCC--GGUA-CUUG-GCAGC- -5'
18971 5' -54.6 NC_004683.1 + 41961 0.69 0.60295
Target:  5'- aCGCUCggGCGccccUCGGCCugccaGUGAcgACCGUUGc -3'
miRNA:   3'- -GCGAGa-UGC----AGCCGG-----UACU--UGGCAGC- -5'
18971 5' -54.6 NC_004683.1 + 44230 0.69 0.581252
Target:  5'- aCGCaauucccugaUCU-CGUCGGCgGUGAACaCGUCc -3'
miRNA:   3'- -GCG----------AGAuGCAGCCGgUACUUG-GCAGc -5'
18971 5' -54.6 NC_004683.1 + 25707 0.71 0.517397
Target:  5'- uGCaUCUGCGUCGGCCugcuGCUGcUCGc -3'
miRNA:   3'- gCG-AGAUGCAGCCGGuacuUGGC-AGC- -5'
18971 5' -54.6 NC_004683.1 + 47706 0.73 0.399718
Target:  5'- gCGCUCagGCGUCGGCCGUcgGGAUUGUg- -3'
miRNA:   3'- -GCGAGa-UGCAGCCGGUA--CUUGGCAgc -5'
18971 5' -54.6 NC_004683.1 + 55589 1.1 0.001201
Target:  5'- aCGCUCUACGUCGGCCAUGAACCGUCGa -3'
miRNA:   3'- -GCGAGAUGCAGCCGGUACUUGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.