miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 5' -58.7 NC_004683.1 + 962 0.71 0.249627
Target:  5'- -gCGCGCACcaacaGugGUGGCCGUggcuuGACCGg -3'
miRNA:   3'- aaGCGCGUG-----CugUACCGGCGu----CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 2188 0.66 0.502396
Target:  5'- --gGUGCACuAC-UGGCCGC-GACCGc -3'
miRNA:   3'- aagCGCGUGcUGuACCGGCGuCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 2745 0.67 0.439659
Target:  5'- aUgGUGCGCGGC--GGCCGCGGcgagcucggcggcgGCCAa -3'
miRNA:   3'- aAgCGCGUGCUGuaCCGGCGUC--------------UGGU- -5'
18972 5' -58.7 NC_004683.1 + 5835 0.67 0.452248
Target:  5'- cUCGcCGCGCGGCAccGCCGCcaAGGCg- -3'
miRNA:   3'- aAGC-GCGUGCUGUacCGGCG--UCUGgu -5'
18972 5' -58.7 NC_004683.1 + 6490 0.66 0.523133
Target:  5'- -gUGCGCGCGACccuUGaCCGCGGugUc -3'
miRNA:   3'- aaGCGCGUGCUGu--ACcGGCGUCugGu -5'
18972 5' -58.7 NC_004683.1 + 6829 0.67 0.462064
Target:  5'- gUCG-GCAgCGACAgcacgcGGCCGCccGGGCCGu -3'
miRNA:   3'- aAGCgCGU-GCUGUa-----CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 8153 0.7 0.283227
Target:  5'- -aCGCGCuCGGCGccgaGGCCGCgaAGGCCGc -3'
miRNA:   3'- aaGCGCGuGCUGUa---CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 10490 0.7 0.31261
Target:  5'- --gGCGCGCGAU---GCUGCGGGCCGg -3'
miRNA:   3'- aagCGCGUGCUGuacCGGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 12154 0.66 0.492162
Target:  5'- -cCGCGCucagguggGCGGCAgggggUGGCgGgGGGCCAg -3'
miRNA:   3'- aaGCGCG--------UGCUGU-----ACCGgCgUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 13492 0.66 0.512721
Target:  5'- gUUGaGCGCGaACggGGCCGCcugcGGGCCAc -3'
miRNA:   3'- aAGCgCGUGC-UGuaCCGGCG----UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 15850 0.66 0.523133
Target:  5'- -cUGCuGCACGGCAacaucggccaGGCCGCugAGGCCGc -3'
miRNA:   3'- aaGCG-CGUGCUGUa---------CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 16008 0.66 0.482026
Target:  5'- -cCGCGCaACGACAaGGgCGCGGcaacguuccgcACCAa -3'
miRNA:   3'- aaGCGCG-UGCUGUaCCgGCGUC-----------UGGU- -5'
18972 5' -58.7 NC_004683.1 + 18124 0.66 0.489111
Target:  5'- gUCGCcgccggcaccuaccGCACGcCGUGGCgGcCGGACCc -3'
miRNA:   3'- aAGCG--------------CGUGCuGUACCGgC-GUCUGGu -5'
18972 5' -58.7 NC_004683.1 + 18175 0.67 0.432012
Target:  5'- aUCGUGC-CGAUcugauagGUGGCCGUGGugCc -3'
miRNA:   3'- aAGCGCGuGCUG-------UACCGGCGUCugGu -5'
18972 5' -58.7 NC_004683.1 + 18978 0.67 0.422563
Target:  5'- -gUGCGCACGAacucCcgGGCCGCcuccugcGGAUCGa -3'
miRNA:   3'- aaGCGCGUGCU----GuaCCGGCG-------UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 19309 0.66 0.512721
Target:  5'- -cCGCGUuCGACccGGCgGCGGccACCAg -3'
miRNA:   3'- aaGCGCGuGCUGuaCCGgCGUC--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 20164 0.72 0.213728
Target:  5'- -gCGUGCACGAUcgGGcCCGCGG-CCu -3'
miRNA:   3'- aaGCGCGUGCUGuaCC-GGCGUCuGGu -5'
18972 5' -58.7 NC_004683.1 + 20402 0.67 0.442546
Target:  5'- gUUCGCGCGgGACAUGaacgcgcuGCCGCcgucGCCGc -3'
miRNA:   3'- -AAGCGCGUgCUGUAC--------CGGCGuc--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 20876 0.7 0.276232
Target:  5'- gUUCGCGUGCGACGaaacUGGCCu--GGCCAc -3'
miRNA:   3'- -AAGCGCGUGCUGU----ACCGGcguCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 21079 0.66 0.512721
Target:  5'- gUCGCuGCGgGACGgucGGCgaCGguGACCAg -3'
miRNA:   3'- aAGCG-CGUgCUGUa--CCG--GCguCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.