miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 5' -58.7 NC_004683.1 + 33845 0.68 0.369446
Target:  5'- cUCGCGCGguCG-CcgGGaccaCCGCAGGCCAu -3'
miRNA:   3'- aAGCGCGU--GCuGuaCC----GGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 33311 0.7 0.297637
Target:  5'- --gGUGCcuuguGCGACcUGGCCGCGGAUCu -3'
miRNA:   3'- aagCGCG-----UGCUGuACCGGCGUCUGGu -5'
18972 5' -58.7 NC_004683.1 + 10490 0.7 0.31261
Target:  5'- --gGCGCGCGAU---GCUGCGGGCCGg -3'
miRNA:   3'- aagCGCGUGCUGuacCGGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 31377 0.7 0.31261
Target:  5'- gUUC-CGCucCGAUGUGGCgGUAGGCCAg -3'
miRNA:   3'- -AAGcGCGu-GCUGUACCGgCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 44845 0.69 0.320307
Target:  5'- cUCGCGCAaucgcCGugGUGGCCcgGCcuggAGGCCGa -3'
miRNA:   3'- aAGCGCGU-----GCugUACCGG--CG----UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 50958 0.69 0.352508
Target:  5'- gUCGCGCACaGCGcuccGGCCGCAcccGCCGc -3'
miRNA:   3'- aAGCGCGUGcUGUa---CCGGCGUc--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 53640 0.68 0.360908
Target:  5'- -cCGC-CGCGACcUGGCCGCGG-CUg -3'
miRNA:   3'- aaGCGcGUGCUGuACCGGCGUCuGGu -5'
18972 5' -58.7 NC_004683.1 + 51127 0.68 0.360908
Target:  5'- -cCG-GCGCGAag-GGCCGCAaGGCCGa -3'
miRNA:   3'- aaGCgCGUGCUguaCCGGCGU-CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 52954 0.68 0.369446
Target:  5'- cUCGCGCACGuGCgugagGUGGCCagaaagaagcGCAGGCgCAa -3'
miRNA:   3'- aAGCGCGUGC-UG-----UACCGG----------CGUCUG-GU- -5'
18972 5' -58.7 NC_004683.1 + 26435 0.7 0.290362
Target:  5'- -gUGcCGC-CGAguUGGCCGCAGugCAc -3'
miRNA:   3'- aaGC-GCGuGCUguACCGGCGUCugGU- -5'
18972 5' -58.7 NC_004683.1 + 8153 0.7 0.283227
Target:  5'- -aCGCGCuCGGCGccgaGGCCGCgaAGGCCGc -3'
miRNA:   3'- aaGCGCGuGCUGUa---CCGGCG--UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 20876 0.7 0.276232
Target:  5'- gUUCGCGUGCGACGaaacUGGCCu--GGCCAc -3'
miRNA:   3'- -AAGCGCGUGCUGU----ACCGGcguCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 43025 0.77 0.105397
Target:  5'- --gGCGUACGACAUGGCCGaaaaGGugCGu -3'
miRNA:   3'- aagCGCGUGCUGUACCGGCg---UCugGU- -5'
18972 5' -58.7 NC_004683.1 + 47024 0.75 0.128045
Target:  5'- -gCGCGCACGAUgAUGGCCaaCGGGCCGa -3'
miRNA:   3'- aaGCGCGUGCUG-UACCGGc-GUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 32505 0.75 0.131627
Target:  5'- aUCGUGCAgccgGACGUGG-CGCAGACCGg -3'
miRNA:   3'- aAGCGCGUg---CUGUACCgGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 20164 0.72 0.213728
Target:  5'- -gCGUGCACGAUcgGGcCCGCGG-CCu -3'
miRNA:   3'- aaGCGCGUGCUGuaCC-GGCGUCuGGu -5'
18972 5' -58.7 NC_004683.1 + 45479 0.72 0.219388
Target:  5'- cUCGCGCGCGACGcgccCCGCAccGACCGg -3'
miRNA:   3'- aAGCGCGUGCUGUacc-GGCGU--CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53439 0.71 0.243316
Target:  5'- -aCGCGgACGACAaccUGGCCGCcgaGGGCUu -3'
miRNA:   3'- aaGCGCgUGCUGU---ACCGGCG---UCUGGu -5'
18972 5' -58.7 NC_004683.1 + 962 0.71 0.249627
Target:  5'- -gCGCGCACcaacaGugGUGGCCGUggcuuGACCGg -3'
miRNA:   3'- aaGCGCGUG-----CugUACCGGCGu----CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 21137 0.71 0.262656
Target:  5'- -cCGCGCugcugguccCGaACAUcccGGCCGCGGACCAc -3'
miRNA:   3'- aaGCGCGu--------GC-UGUA---CCGGCGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.