miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 5' -56.3 NC_004683.1 + 23808 0.68 0.496047
Target:  5'- -cGGCGCCGgGgugguGCCGcCGCCGGUGc-- -3'
miRNA:   3'- gaCCGUGGCgU-----UGGU-GCGGUCACuua -5'
18973 5' -56.3 NC_004683.1 + 20303 0.68 0.506501
Target:  5'- -cGGCACCG--ACUGCGCCAGcGAu- -3'
miRNA:   3'- gaCCGUGGCguUGGUGCGGUCaCUua -5'
18973 5' -56.3 NC_004683.1 + 13855 0.68 0.506501
Target:  5'- -aGGcCACCGagGACCGCGCCGGcgcUGAc- -3'
miRNA:   3'- gaCC-GUGGCg-UUGGUGCGGUC---ACUua -5'
18973 5' -56.3 NC_004683.1 + 53190 0.68 0.506501
Target:  5'- uCUGGCAauccCUGCAGCgcgCACGCC-GUGAGc -3'
miRNA:   3'- -GACCGU----GGCGUUG---GUGCGGuCACUUa -5'
18973 5' -56.3 NC_004683.1 + 23171 0.68 0.517049
Target:  5'- gCUGGCgaaCGCccacgaGAgCGCGCCGGUGAGc -3'
miRNA:   3'- -GACCGug-GCG------UUgGUGCGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 53801 0.68 0.517049
Target:  5'- -cGGCgugcacuuACCGCAGCCGCaCCAuGUGGGg -3'
miRNA:   3'- gaCCG--------UGGCGUUGGUGcGGU-CACUUa -5'
18973 5' -56.3 NC_004683.1 + 55784 0.67 0.538397
Target:  5'- -cGGuCGCCGcCGACgACGCCAGcguUGAGc -3'
miRNA:   3'- gaCC-GUGGC-GUUGgUGCGGUC---ACUUa -5'
18973 5' -56.3 NC_004683.1 + 21990 0.67 0.548103
Target:  5'- gCUGGCGCgCGCGGCCAagcaugguucuacUGCUaccAGUGAc- -3'
miRNA:   3'- -GACCGUG-GCGUUGGU-------------GCGG---UCACUua -5'
18973 5' -56.3 NC_004683.1 + 40200 0.67 0.549185
Target:  5'- uUGGCGauggUCGCGGCCGCGuCCGGcUGGu- -3'
miRNA:   3'- gACCGU----GGCGUUGGUGC-GGUC-ACUua -5'
18973 5' -56.3 NC_004683.1 + 56158 0.67 0.549185
Target:  5'- gUGGUugCGguGCCAgCGCCAGa---- -3'
miRNA:   3'- gACCGugGCguUGGU-GCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 24726 0.67 0.56004
Target:  5'- -aGGCGCgcgaacucgGCGGCCuggGCGCCGGUGAc- -3'
miRNA:   3'- gaCCGUGg--------CGUUGG---UGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 28800 0.67 0.56004
Target:  5'- aUGGCggaucgAUCGUGACCGCGUCAG-GggUg -3'
miRNA:   3'- gACCG------UGGCGUUGGUGCGGUCaCuuA- -5'
18973 5' -56.3 NC_004683.1 + 16613 0.67 0.570953
Target:  5'- gUGGCGgccgggggauCCGCAGCCAgaCCGGUGGGc -3'
miRNA:   3'- gACCGU----------GGCGUUGGUgcGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 21424 0.67 0.570953
Target:  5'- aUGGuCACCGaCAGCgGCGCCGGc---- -3'
miRNA:   3'- gACC-GUGGC-GUUGgUGCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 38733 0.67 0.581916
Target:  5'- cCUGGCGauauccaCGCGACCACGaacaUGGUGGc- -3'
miRNA:   3'- -GACCGUg------GCGUUGGUGCg---GUCACUua -5'
18973 5' -56.3 NC_004683.1 + 18002 0.67 0.581916
Target:  5'- aUGGUGCCGU--CCugGCCgGGUGGGc -3'
miRNA:   3'- gACCGUGGCGuuGGugCGG-UCACUUa -5'
18973 5' -56.3 NC_004683.1 + 4742 0.67 0.581916
Target:  5'- -aGGC-CCGCAACCGgGCCGacGAGg -3'
miRNA:   3'- gaCCGuGGCGUUGGUgCGGUcaCUUa -5'
18973 5' -56.3 NC_004683.1 + 28799 0.67 0.581916
Target:  5'- gUGaGUGCCGCAGCCAUGCUcGUcGAc- -3'
miRNA:   3'- gAC-CGUGGCGUUGGUGCGGuCA-CUua -5'
18973 5' -56.3 NC_004683.1 + 13805 0.67 0.581916
Target:  5'- uUGGCAgCGCAgGCCGCGCacCGGcGAAa -3'
miRNA:   3'- gACCGUgGCGU-UGGUGCG--GUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 5844 0.66 0.592922
Target:  5'- -cGGCACCGCcgccaaggcGCCugGCUGGcGAAc -3'
miRNA:   3'- gaCCGUGGCGu--------UGGugCGGUCaCUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.