miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 5' -56.3 NC_004683.1 + 56086 1.06 0.001084
Target:  5'- gCUGGCACCGCAACCACGCCAGUGAAUg -3'
miRNA:   3'- -GACCGUGGCGUUGGUGCGGUCACUUA- -5'
18973 5' -56.3 NC_004683.1 + 12707 0.75 0.190704
Target:  5'- -cGGCGCCGCGGCCAgGCUGGcGAc- -3'
miRNA:   3'- gaCCGUGGCGUUGGUgCGGUCaCUua -5'
18973 5' -56.3 NC_004683.1 + 48506 0.73 0.255278
Target:  5'- gUGGCGgUGCGaucaauGCCGCGCCAGUGu-- -3'
miRNA:   3'- gACCGUgGCGU------UGGUGCGGUCACuua -5'
18973 5' -56.3 NC_004683.1 + 12989 0.72 0.311997
Target:  5'- gUGGCugCGCGagcgcggcuuccuGCCggGCGCCGGUGGc- -3'
miRNA:   3'- gACCGugGCGU-------------UGG--UGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 40299 0.72 0.312773
Target:  5'- gCUGGCAUCGCcgagggcaucGCCGCGgCGGUGAc- -3'
miRNA:   3'- -GACCGUGGCGu---------UGGUGCgGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 53636 0.72 0.312773
Target:  5'- -aGGCccGCCGCGACCugGCCgcGGcUGAGg -3'
miRNA:   3'- gaCCG--UGGCGUUGGugCGG--UC-ACUUa -5'
18973 5' -56.3 NC_004683.1 + 22057 0.72 0.312773
Target:  5'- -cGcGCGCCaGCAccacccGCCugGCCGGUGAAc -3'
miRNA:   3'- gaC-CGUGG-CGU------UGGugCGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 43392 0.71 0.353435
Target:  5'- -cGGCGCCGCAACC--GCCAGg---- -3'
miRNA:   3'- gaCCGUGGCGUUGGugCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 21449 0.71 0.353435
Target:  5'- --aGCGCCGCAugCccaguCGCCGGUGAc- -3'
miRNA:   3'- gacCGUGGCGUugGu----GCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 46388 0.71 0.362003
Target:  5'- gUGGgGCCGCuACCGCGcCCAGUa--- -3'
miRNA:   3'- gACCgUGGCGuUGGUGC-GGUCAcuua -5'
18973 5' -56.3 NC_004683.1 + 46657 0.7 0.388562
Target:  5'- -cGGCACCaGCAGCgGCaGCCAGUa--- -3'
miRNA:   3'- gaCCGUGG-CGUUGgUG-CGGUCAcuua -5'
18973 5' -56.3 NC_004683.1 + 12167 0.7 0.397694
Target:  5'- -cGGCauGCCGgGGCCGCGCUcaGGUGGGc -3'
miRNA:   3'- gaCCG--UGGCgUUGGUGCGG--UCACUUa -5'
18973 5' -56.3 NC_004683.1 + 43986 0.7 0.406964
Target:  5'- gCUGGCACU-CGACCACGCCgcgccgGGUGu-- -3'
miRNA:   3'- -GACCGUGGcGUUGGUGCGG------UCACuua -5'
18973 5' -56.3 NC_004683.1 + 31231 0.69 0.416367
Target:  5'- -gGGCAgaGCGACaacCGCCGGUGAGg -3'
miRNA:   3'- gaCCGUggCGUUGgu-GCGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 22023 0.69 0.435566
Target:  5'- -cGGCgGCCGCAccGCCAcCGCCGGgcgGAu- -3'
miRNA:   3'- gaCCG-UGGCGU--UGGU-GCGGUCa--CUua -5'
18973 5' -56.3 NC_004683.1 + 49624 0.69 0.445356
Target:  5'- aUGGCAUCGCAuCCGcCGCCGcUGAc- -3'
miRNA:   3'- gACCGUGGCGUuGGU-GCGGUcACUua -5'
18973 5' -56.3 NC_004683.1 + 26633 0.69 0.445356
Target:  5'- -gGGCGgCGCAACCAgccagggugauCGCCAG-GAAc -3'
miRNA:   3'- gaCCGUgGCGUUGGU-----------GCGGUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 41955 0.69 0.455267
Target:  5'- -gGGCGCCccuCGGCC-UGCCAGUGAc- -3'
miRNA:   3'- gaCCGUGGc--GUUGGuGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 32698 0.69 0.455267
Target:  5'- uCUGGCAgUgGCAGCuCGCGCCGGcUGGc- -3'
miRNA:   3'- -GACCGU-GgCGUUG-GUGCGGUC-ACUua -5'
18973 5' -56.3 NC_004683.1 + 21157 0.68 0.485691
Target:  5'- -cGGUACCGCGgaaACCAUGCCguccGGUGc-- -3'
miRNA:   3'- gaCCGUGGCGU---UGGUGCGG----UCACuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.