miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 5' -56.3 NC_004683.1 + 1134 0.66 0.592922
Target:  5'- -aGGCACCGCAGacaGCGUgGGcaUGAGUg -3'
miRNA:   3'- gaCCGUGGCGUUgg-UGCGgUC--ACUUA- -5'
18973 5' -56.3 NC_004683.1 + 4742 0.67 0.581916
Target:  5'- -aGGC-CCGCAACCGgGCCGacGAGg -3'
miRNA:   3'- gaCCGuGGCGUUGGUgCGGUcaCUUa -5'
18973 5' -56.3 NC_004683.1 + 5844 0.66 0.592922
Target:  5'- -cGGCACCGCcgccaaggcGCCugGCUGGcGAAc -3'
miRNA:   3'- gaCCGUGGCGu--------UGGugCGGUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 12167 0.7 0.397694
Target:  5'- -cGGCauGCCGgGGCCGCGCUcaGGUGGGc -3'
miRNA:   3'- gaCCG--UGGCgUUGGUGCGG--UCACUUa -5'
18973 5' -56.3 NC_004683.1 + 12707 0.75 0.190704
Target:  5'- -cGGCGCCGCGGCCAgGCUGGcGAc- -3'
miRNA:   3'- gaCCGUGGCGUUGGUgCGGUCaCUua -5'
18973 5' -56.3 NC_004683.1 + 12989 0.72 0.311997
Target:  5'- gUGGCugCGCGagcgcggcuuccuGCCggGCGCCGGUGGc- -3'
miRNA:   3'- gACCGugGCGU-------------UGG--UGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 13447 0.66 0.626105
Target:  5'- gUGGCAgCGCGuuccCCGCGCagGGUGGc- -3'
miRNA:   3'- gACCGUgGCGUu---GGUGCGg-UCACUua -5'
18973 5' -56.3 NC_004683.1 + 13805 0.67 0.581916
Target:  5'- uUGGCAgCGCAgGCCGCGCacCGGcGAAa -3'
miRNA:   3'- gACCGUgGCGU-UGGUGCG--GUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 13855 0.68 0.506501
Target:  5'- -aGGcCACCGagGACCGCGCCGGcgcUGAc- -3'
miRNA:   3'- gaCC-GUGGCg-UUGGUGCGGUC---ACUua -5'
18973 5' -56.3 NC_004683.1 + 16613 0.67 0.570953
Target:  5'- gUGGCGgccgggggauCCGCAGCCAgaCCGGUGGGc -3'
miRNA:   3'- gACCGU----------GGCGUUGGUgcGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 18002 0.67 0.581916
Target:  5'- aUGGUGCCGU--CCugGCCgGGUGGGc -3'
miRNA:   3'- gACCGUGGCGuuGGugCGG-UCACUUa -5'
18973 5' -56.3 NC_004683.1 + 20303 0.68 0.506501
Target:  5'- -cGGCACCG--ACUGCGCCAGcGAu- -3'
miRNA:   3'- gaCCGUGGCguUGGUGCGGUCaCUua -5'
18973 5' -56.3 NC_004683.1 + 20430 0.66 0.64827
Target:  5'- -cGGCACCgGCGgugcaggggccACCGCGCCGaUGGc- -3'
miRNA:   3'- gaCCGUGG-CGU-----------UGGUGCGGUcACUua -5'
18973 5' -56.3 NC_004683.1 + 21157 0.68 0.485691
Target:  5'- -cGGUACCGCGgaaACCAUGCCguccGGUGc-- -3'
miRNA:   3'- gaCCGUGGCGU---UGGUGCGG----UCACuua -5'
18973 5' -56.3 NC_004683.1 + 21424 0.67 0.570953
Target:  5'- aUGGuCACCGaCAGCgGCGCCGGc---- -3'
miRNA:   3'- gACC-GUGGC-GUUGgUGCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 21449 0.71 0.353435
Target:  5'- --aGCGCCGCAugCccaguCGCCGGUGAc- -3'
miRNA:   3'- gacCGUGGCGUugGu----GCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 21990 0.67 0.548103
Target:  5'- gCUGGCGCgCGCGGCCAagcaugguucuacUGCUaccAGUGAc- -3'
miRNA:   3'- -GACCGUG-GCGUUGGU-------------GCGG---UCACUua -5'
18973 5' -56.3 NC_004683.1 + 22023 0.69 0.435566
Target:  5'- -cGGCgGCCGCAccGCCAcCGCCGGgcgGAu- -3'
miRNA:   3'- gaCCG-UGGCGU--UGGU-GCGGUCa--CUua -5'
18973 5' -56.3 NC_004683.1 + 22057 0.72 0.312773
Target:  5'- -cGcGCGCCaGCAccacccGCCugGCCGGUGAAc -3'
miRNA:   3'- gaC-CGUGG-CGU------UGGugCGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 23171 0.68 0.517049
Target:  5'- gCUGGCgaaCGCccacgaGAgCGCGCCGGUGAGc -3'
miRNA:   3'- -GACCGug-GCG------UUgGUGCGGUCACUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.