miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 5' -56.3 NC_004683.1 + 40931 0.66 0.615026
Target:  5'- -gGGCGCCGagcuGACCGCGCCGc----- -3'
miRNA:   3'- gaCCGUGGCg---UUGGUGCGGUcacuua -5'
18973 5' -56.3 NC_004683.1 + 28800 0.67 0.56004
Target:  5'- aUGGCggaucgAUCGUGACCGCGUCAG-GggUg -3'
miRNA:   3'- gACCG------UGGCGUUGGUGCGGUCaCuuA- -5'
18973 5' -56.3 NC_004683.1 + 16613 0.67 0.570953
Target:  5'- gUGGCGgccgggggauCCGCAGCCAgaCCGGUGGGc -3'
miRNA:   3'- gACCGU----------GGCGUUGGUgcGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 21424 0.67 0.570953
Target:  5'- aUGGuCACCGaCAGCgGCGCCGGc---- -3'
miRNA:   3'- gACC-GUGGC-GUUGgUGCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 4742 0.67 0.581916
Target:  5'- -aGGC-CCGCAACCGgGCCGacGAGg -3'
miRNA:   3'- gaCCGuGGCGUUGGUgCGGUcaCUUa -5'
18973 5' -56.3 NC_004683.1 + 38733 0.67 0.581916
Target:  5'- cCUGGCGauauccaCGCGACCACGaacaUGGUGGc- -3'
miRNA:   3'- -GACCGUg------GCGUUGGUGCg---GUCACUua -5'
18973 5' -56.3 NC_004683.1 + 5844 0.66 0.592922
Target:  5'- -cGGCACCGCcgccaaggcGCCugGCUGGcGAAc -3'
miRNA:   3'- gaCCGUGGCGu--------UGGugCGGUCaCUUa -5'
18973 5' -56.3 NC_004683.1 + 42622 0.66 0.592922
Target:  5'- -cGGCgACCGCGACgACGCCcGcGAc- -3'
miRNA:   3'- gaCCG-UGGCGUUGgUGCGGuCaCUua -5'
18973 5' -56.3 NC_004683.1 + 47110 0.66 0.603962
Target:  5'- gCUGGaGCCGCGAgagaucgcCCGCGCCA-UGGAc -3'
miRNA:   3'- -GACCgUGGCGUU--------GGUGCGGUcACUUa -5'
18973 5' -56.3 NC_004683.1 + 21990 0.67 0.548103
Target:  5'- gCUGGCGCgCGCGGCCAagcaugguucuacUGCUaccAGUGAc- -3'
miRNA:   3'- -GACCGUG-GCGUUGGU-------------GCGG---UCACUua -5'
18973 5' -56.3 NC_004683.1 + 13855 0.68 0.506501
Target:  5'- -aGGcCACCGagGACCGCGCCGGcgcUGAc- -3'
miRNA:   3'- gaCC-GUGGCg-UUGGUGCGGUC---ACUua -5'
18973 5' -56.3 NC_004683.1 + 53190 0.68 0.506501
Target:  5'- uCUGGCAauccCUGCAGCgcgCACGCC-GUGAGc -3'
miRNA:   3'- -GACCGU----GGCGUUG---GUGCGGuCACUUa -5'
18973 5' -56.3 NC_004683.1 + 48506 0.73 0.255278
Target:  5'- gUGGCGgUGCGaucaauGCCGCGCCAGUGu-- -3'
miRNA:   3'- gACCGUgGCGU------UGGUGCGGUCACuua -5'
18973 5' -56.3 NC_004683.1 + 12989 0.72 0.311997
Target:  5'- gUGGCugCGCGagcgcggcuuccuGCCggGCGCCGGUGGc- -3'
miRNA:   3'- gACCGugGCGU-------------UGG--UGCGGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 40299 0.72 0.312773
Target:  5'- gCUGGCAUCGCcgagggcaucGCCGCGgCGGUGAc- -3'
miRNA:   3'- -GACCGUGGCGu---------UGGUGCgGUCACUua -5'
18973 5' -56.3 NC_004683.1 + 53636 0.72 0.312773
Target:  5'- -aGGCccGCCGCGACCugGCCgcGGcUGAGg -3'
miRNA:   3'- gaCCG--UGGCGUUGGugCGG--UC-ACUUa -5'
18973 5' -56.3 NC_004683.1 + 43392 0.71 0.353435
Target:  5'- -cGGCGCCGCAACC--GCCAGg---- -3'
miRNA:   3'- gaCCGUGGCGUUGGugCGGUCacuua -5'
18973 5' -56.3 NC_004683.1 + 46388 0.71 0.362003
Target:  5'- gUGGgGCCGCuACCGCGcCCAGUa--- -3'
miRNA:   3'- gACCgUGGCGuUGGUGC-GGUCAcuua -5'
18973 5' -56.3 NC_004683.1 + 31231 0.69 0.416367
Target:  5'- -gGGCAgaGCGACaacCGCCGGUGAGg -3'
miRNA:   3'- gaCCGUggCGUUGgu-GCGGUCACUUa -5'
18973 5' -56.3 NC_004683.1 + 32698 0.69 0.455267
Target:  5'- uCUGGCAgUgGCAGCuCGCGCCGGcUGGc- -3'
miRNA:   3'- -GACCGU-GgCGUUG-GUGCGGUC-ACUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.