miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18974 3' -58.1 NC_004683.1 + 56256 1.06 0.000809
Target:  5'- aACGCGCUACAGCGCGCAGGACACGUAc -3'
miRNA:   3'- -UGCGCGAUGUCGCGCGUCCUGUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 44512 0.76 0.132029
Target:  5'- gGCGCGCUGCGcgcguuguGCGCGCGacgacuucGGugGCGUAu -3'
miRNA:   3'- -UGCGCGAUGU--------CGCGCGU--------CCugUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 12697 0.73 0.200413
Target:  5'- gGCGgGCacgGCauccucggcauccucGGCGCGCGGGGCGCGUu -3'
miRNA:   3'- -UGCgCGa--UG---------------UCGCGCGUCCUGUGCAu -5'
18974 3' -58.1 NC_004683.1 + 40162 0.73 0.20362
Target:  5'- gGCGCGCUgggcccgggcgaACAGCGCGUc-GACGCGUu -3'
miRNA:   3'- -UGCGCGA------------UGUCGCGCGucCUGUGCAu -5'
18974 3' -58.1 NC_004683.1 + 51258 0.73 0.214634
Target:  5'- gGCGCGUUcucgGCGGCGCGCcGGAuccaguuccgcCACGUGg -3'
miRNA:   3'- -UGCGCGA----UGUCGCGCGuCCU-----------GUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 56380 0.72 0.22033
Target:  5'- gACG-GCgUGCAGUGUGCGGGGCGCaGUGa -3'
miRNA:   3'- -UGCgCG-AUGUCGCGCGUCCUGUG-CAU- -5'
18974 3' -58.1 NC_004683.1 + 40077 0.71 0.285303
Target:  5'- gACGCGCUGuucgcccgggccCAGCGCGCcuugacagaccagccGGACGCGg- -3'
miRNA:   3'- -UGCGCGAU------------GUCGCGCGu--------------CCUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 14491 0.7 0.296885
Target:  5'- aACcCGUUGuCGGCGCGCAGGACcaaggucagcuccuGCGUGc -3'
miRNA:   3'- -UGcGCGAU-GUCGCGCGUCCUG--------------UGCAU- -5'
18974 3' -58.1 NC_004683.1 + 40319 0.7 0.299097
Target:  5'- cGCGCGcCUGCAGCucgGCGCGGGccugcucgGCGuCGUAg -3'
miRNA:   3'- -UGCGC-GAUGUCG---CGCGUCC--------UGU-GCAU- -5'
18974 3' -58.1 NC_004683.1 + 12339 0.69 0.346014
Target:  5'- gGCGCGCaACAGCGuCGagucGGCGCGUAu -3'
miRNA:   3'- -UGCGCGaUGUCGC-GCguc-CUGUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 12766 0.69 0.354328
Target:  5'- uACGCGCaGCAGgGCuacggcuacccgGCGGGAUACGc- -3'
miRNA:   3'- -UGCGCGaUGUCgCG------------CGUCCUGUGCau -5'
18974 3' -58.1 NC_004683.1 + 4049 0.69 0.37051
Target:  5'- cGCGCGCUACcacguGCGCGCcgcccucGGGugcgaGCACGg- -3'
miRNA:   3'- -UGCGCGAUGu----CGCGCG-------UCC-----UGUGCau -5'
18974 3' -58.1 NC_004683.1 + 24725 0.69 0.371376
Target:  5'- gGCGCGCgaacucgGCGGCcuggGCGCcGGugACGUc -3'
miRNA:   3'- -UGCGCGa------UGUCG----CGCGuCCugUGCAu -5'
18974 3' -58.1 NC_004683.1 + 35072 0.69 0.380107
Target:  5'- cCGUGCUACAGacaGCAGGAcCGCGa- -3'
miRNA:   3'- uGCGCGAUGUCgcgCGUCCU-GUGCau -5'
18974 3' -58.1 NC_004683.1 + 11707 0.68 0.397977
Target:  5'- -aGCGCUGCAGCGgcaCGCcgacgguuGGGACACc-- -3'
miRNA:   3'- ugCGCGAUGUCGC---GCG--------UCCUGUGcau -5'
18974 3' -58.1 NC_004683.1 + 54344 0.68 0.407111
Target:  5'- aACGCGggGCGGUuCGguGGGCAUGUu -3'
miRNA:   3'- -UGCGCgaUGUCGcGCguCCUGUGCAu -5'
18974 3' -58.1 NC_004683.1 + 44431 0.68 0.416376
Target:  5'- cGCGCGC-ACAacGCGCGCAGcGCGCc-- -3'
miRNA:   3'- -UGCGCGaUGU--CGCGCGUCcUGUGcau -5'
18974 3' -58.1 NC_004683.1 + 17952 0.68 0.425769
Target:  5'- aACGCGCUGCGGCGUccccgGCccgcccgguuGGGugACaGUGa -3'
miRNA:   3'- -UGCGCGAUGUCGCG-----CG----------UCCugUG-CAU- -5'
18974 3' -58.1 NC_004683.1 + 6665 0.68 0.425769
Target:  5'- cCGUGCUggccGCGGCGCGCcgcuGGuguggcugGCACGUGu -3'
miRNA:   3'- uGCGCGA----UGUCGCGCGu---CC--------UGUGCAU- -5'
18974 3' -58.1 NC_004683.1 + 5389 0.68 0.432418
Target:  5'- gGCGCGCuucuccUcuucggugaggaucGCGGCGUGCGGGuuGCGUGc -3'
miRNA:   3'- -UGCGCG------A--------------UGUCGCGCGUCCugUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.