Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18974 | 3' | -58.1 | NC_004683.1 | + | 250 | 0.66 | 0.547106 |
Target: 5'- cCGCuGCUGCccGCG-GCGGGGCugGUc -3' miRNA: 3'- uGCG-CGAUGu-CGCgCGUCCUGugCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 3179 | 0.67 | 0.454684 |
Target: 5'- aACGUGC-GCGGCgGCGguGaGACACGc- -3' miRNA: 3'- -UGCGCGaUGUCG-CGCguC-CUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 4049 | 0.69 | 0.37051 |
Target: 5'- cGCGCGCUACcacguGCGCGCcgcccucGGGugcgaGCACGg- -3' miRNA: 3'- -UGCGCGAUGu----CGCGCG-------UCC-----UGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 5389 | 0.68 | 0.432418 |
Target: 5'- gGCGCGCuucuccUcuucggugaggaucGCGGCGUGCGGGuuGCGUGc -3' miRNA: 3'- -UGCGCG------A--------------UGUCGCGCGUCCugUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 6665 | 0.68 | 0.425769 |
Target: 5'- cCGUGCUggccGCGGCGCGCcgcuGGuguggcugGCACGUGu -3' miRNA: 3'- uGCGCGA----UGUCGCGCGu---CC--------UGUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 6877 | 0.66 | 0.547106 |
Target: 5'- gGC-CGCUggACGGCGCGCGacGGCGCGa- -3' miRNA: 3'- -UGcGCGA--UGUCGCGCGUc-CUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 8152 | 0.66 | 0.525948 |
Target: 5'- uACGCGCU-CGGCGCcgAGGcCGCGa- -3' miRNA: 3'- -UGCGCGAuGUCGCGcgUCCuGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 11707 | 0.68 | 0.397977 |
Target: 5'- -aGCGCUGCAGCGgcaCGCcgacgguuGGGACACc-- -3' miRNA: 3'- ugCGCGAUGUCGC---GCG--------UCCUGUGcau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12339 | 0.69 | 0.346014 |
Target: 5'- gGCGCGCaACAGCGuCGagucGGCGCGUAu -3' miRNA: 3'- -UGCGCGaUGUCGC-GCguc-CUGUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12471 | 0.66 | 0.557786 |
Target: 5'- gAUGCgGCUGuccgaGGCGCaGCAGGGCACc-- -3' miRNA: 3'- -UGCG-CGAUg----UCGCG-CGUCCUGUGcau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12697 | 0.73 | 0.200413 |
Target: 5'- gGCGgGCacgGCauccucggcauccucGGCGCGCGGGGCGCGUu -3' miRNA: 3'- -UGCgCGa--UG---------------UCGCGCGUCCUGUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12766 | 0.69 | 0.354328 |
Target: 5'- uACGCGCaGCAGgGCuacggcuacccgGCGGGAUACGc- -3' miRNA: 3'- -UGCGCGaUGUCgCG------------CGUCCUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 14491 | 0.7 | 0.296885 |
Target: 5'- aACcCGUUGuCGGCGCGCAGGACcaaggucagcuccuGCGUGc -3' miRNA: 3'- -UGcGCGAU-GUCGCGCGUCCUG--------------UGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 17952 | 0.68 | 0.425769 |
Target: 5'- aACGCGCUGCGGCGUccccgGCccgcccgguuGGGugACaGUGa -3' miRNA: 3'- -UGCGCGAUGUCGCG-----CG----------UCCugUG-CAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 20413 | 0.67 | 0.49482 |
Target: 5'- uAUGUGgUGCuguuCGCGCGGGACAUGa- -3' miRNA: 3'- -UGCGCgAUGuc--GCGCGUCCUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 23384 | 0.66 | 0.540728 |
Target: 5'- cCGCGCUGCAGCgggaugacgaugcucGUGCcgGGGAC-CGg- -3' miRNA: 3'- uGCGCGAUGUCG---------------CGCG--UCCUGuGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 24725 | 0.69 | 0.371376 |
Target: 5'- gGCGCGCgaacucgGCGGCcuggGCGCcGGugACGUc -3' miRNA: 3'- -UGCGCGa------UGUCG----CGCGuCCugUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 25284 | 0.66 | 0.547106 |
Target: 5'- cCGCGCUGCcgGGCcUGCAGGcGCACa-- -3' miRNA: 3'- uGCGCGAUG--UCGcGCGUCC-UGUGcau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 26124 | 0.68 | 0.435287 |
Target: 5'- cGCGCGCcggaacggUGCauGGUGUGCAGGAUcuGCGUc -3' miRNA: 3'- -UGCGCG--------AUG--UCGCGCGUCCUG--UGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 33273 | 0.66 | 0.535433 |
Target: 5'- cACGCuucGCggACGGUGCGCuGGgugggauGCACGUAg -3' miRNA: 3'- -UGCG---CGa-UGUCGCGCGuCC-------UGUGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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