miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 3' -53.7 NC_004683.1 + 56386 1.1 0.001105
Target:  5'- uCGACAGUGCGAUCACCGCAUGGCAACa -3'
miRNA:   3'- -GCUGUCACGCUAGUGGCGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 22655 0.78 0.211779
Target:  5'- uCGACGcgcGUGCgccgagguGAUCACCGCGcuUGGCAACa -3'
miRNA:   3'- -GCUGU---CACG--------CUAGUGGCGU--ACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 26343 0.75 0.312841
Target:  5'- uCGGCGGUGCGAg-GCCGCGuUGGCc-- -3'
miRNA:   3'- -GCUGUCACGCUagUGGCGU-ACCGuug -5'
18975 3' -53.7 NC_004683.1 + 15102 0.74 0.328787
Target:  5'- --uCGGUGCgcaaGAUCGCCGCG-GGCGACa -3'
miRNA:   3'- gcuGUCACG----CUAGUGGCGUaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 2514 0.72 0.456509
Target:  5'- uCGuCGGUGCGGUU-CCG-GUGGCAGCg -3'
miRNA:   3'- -GCuGUCACGCUAGuGGCgUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 43578 0.71 0.476857
Target:  5'- cCGACGGUcuGCGGUCGCgGCAgcccccacgagGGCAGg -3'
miRNA:   3'- -GCUGUCA--CGCUAGUGgCGUa----------CCGUUg -5'
18975 3' -53.7 NC_004683.1 + 13723 0.71 0.48098
Target:  5'- uCGcCGGUGCGcggccugcgcugccaAaCACCGCcgGGCAACa -3'
miRNA:   3'- -GCuGUCACGC---------------UaGUGGCGuaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 55795 0.71 0.488238
Target:  5'- uGACGGUGUGAcggUCGCCGCcgacgacgccagcguUGaGCAGCg -3'
miRNA:   3'- gCUGUCACGCU---AGUGGCGu--------------AC-CGUUG- -5'
18975 3' -53.7 NC_004683.1 + 20435 0.71 0.497644
Target:  5'- cCGGCGGUGCaGGggcCACCGCGccgaUGGcCGGCg -3'
miRNA:   3'- -GCUGUCACG-CUa--GUGGCGU----ACC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 36905 0.71 0.518828
Target:  5'- aGACGGUGUGGUCGagaauCCGCAUcgccccGGCggUa -3'
miRNA:   3'- gCUGUCACGCUAGU-----GGCGUA------CCGuuG- -5'
18975 3' -53.7 NC_004683.1 + 24452 0.7 0.529553
Target:  5'- aGACAccgGUGAUCgcgACCGCGUGGCcuGCg -3'
miRNA:   3'- gCUGUca-CGCUAG---UGGCGUACCGu-UG- -5'
18975 3' -53.7 NC_004683.1 + 32970 0.7 0.540359
Target:  5'- uCGACgAGUGCGGcaacguugcgCACCGUGUGGCccuGCu -3'
miRNA:   3'- -GCUG-UCACGCUa---------GUGGCGUACCGu--UG- -5'
18975 3' -53.7 NC_004683.1 + 47573 0.7 0.551238
Target:  5'- gGGCGuccccUGCGAcgGCUGCGUGGCGGCg -3'
miRNA:   3'- gCUGUc----ACGCUagUGGCGUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 39565 0.7 0.551238
Target:  5'- gCGGC-GUuaGAUCGCCGUAcgcGGCAACg -3'
miRNA:   3'- -GCUGuCAcgCUAGUGGCGUa--CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 48507 0.7 0.555609
Target:  5'- uGGCGGUGCGAUCaauGCCGCGccaguguccucgccGGCAc- -3'
miRNA:   3'- gCUGUCACGCUAG---UGGCGUa-------------CCGUug -5'
18975 3' -53.7 NC_004683.1 + 13448 0.7 0.584239
Target:  5'- uGGCAGcGCGuUCcCCGCgcaggGUGGCGGCg -3'
miRNA:   3'- gCUGUCaCGCuAGuGGCG-----UACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 53702 0.69 0.595332
Target:  5'- gCGGCGG-GCcuGAUCgcGCCGCAgcucGGCGGCg -3'
miRNA:   3'- -GCUGUCaCG--CUAG--UGGCGUa---CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 55005 0.69 0.595332
Target:  5'- uCGGCGGccuCGAUC-CCGCAUucGGCGGCu -3'
miRNA:   3'- -GCUGUCac-GCUAGuGGCGUA--CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 2084 0.69 0.606458
Target:  5'- gGGCAGUGC--UCACCGCuaccgcugcgGUGGUAGu -3'
miRNA:   3'- gCUGUCACGcuAGUGGCG----------UACCGUUg -5'
18975 3' -53.7 NC_004683.1 + 12726 0.68 0.649974
Target:  5'- cCGACAGcgggcccagcaGCGG-CGCCGCGgccaggcUGGCGACg -3'
miRNA:   3'- -GCUGUCa----------CGCUaGUGGCGU-------ACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.