miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18975 3' -53.7 NC_004683.1 + 2084 0.69 0.606458
Target:  5'- gGGCAGUGC--UCACCGCuaccgcugcgGUGGUAGu -3'
miRNA:   3'- gCUGUCACGcuAGUGGCG----------UACCGUUg -5'
18975 3' -53.7 NC_004683.1 + 2514 0.72 0.456509
Target:  5'- uCGuCGGUGCGGUU-CCG-GUGGCAGCg -3'
miRNA:   3'- -GCuGUCACGCUAGuGGCgUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 2743 0.66 0.790341
Target:  5'- gGAUGGUGCGcggCgGCCGCGgcgagcucGGCGGCg -3'
miRNA:   3'- gCUGUCACGCua-G-UGGCGUa-------CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 5554 0.67 0.738757
Target:  5'- gGACAcgccGUGCcacacAUCGCCG-GUGGCGACg -3'
miRNA:   3'- gCUGU----CACGc----UAGUGGCgUACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 5897 0.67 0.749343
Target:  5'- cCGGCAGUuCGA-CACC-CAgGGCGGCg -3'
miRNA:   3'- -GCUGUCAcGCUaGUGGcGUaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 8455 0.66 0.800195
Target:  5'- cCGcGCGGgGcCGAUCACCGuCAggagacGGCGACg -3'
miRNA:   3'- -GC-UGUCaC-GCUAGUGGC-GUa-----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 8615 0.66 0.809869
Target:  5'- aGGcCGGUGCGGUgGCCGCccuGCAGu -3'
miRNA:   3'- gCU-GUCACGCUAgUGGCGuacCGUUg -5'
18975 3' -53.7 NC_004683.1 + 12608 0.68 0.68441
Target:  5'- cCGACAaccucGUGCGAuucgUCGCCaGCcUGGCcGCg -3'
miRNA:   3'- -GCUGU-----CACGCU----AGUGG-CGuACCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 12726 0.68 0.649974
Target:  5'- cCGACAGcgggcccagcaGCGG-CGCCGCGgccaggcUGGCGACg -3'
miRNA:   3'- -GCUGUCa----------CGCUaGUGGCGU-------ACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 13448 0.7 0.584239
Target:  5'- uGGCAGcGCGuUCcCCGCgcaggGUGGCGGCg -3'
miRNA:   3'- gCUGUCaCGCuAGuGGCG-----UACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 13723 0.71 0.48098
Target:  5'- uCGcCGGUGCGcggccugcgcugccaAaCACCGCcgGGCAACa -3'
miRNA:   3'- -GCuGUCACGC---------------UaGUGGCGuaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 15102 0.74 0.328787
Target:  5'- --uCGGUGCgcaaGAUCGCCGCG-GGCGACa -3'
miRNA:   3'- gcuGUCACG----CUAGUGGCGUaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 15454 0.68 0.65109
Target:  5'- uCGGCAucGUGC---CGCCGCAgGGCAACc -3'
miRNA:   3'- -GCUGU--CACGcuaGUGGCGUaCCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 16318 0.66 0.790341
Target:  5'- uGAUcuccgAGUGCGcgCugCGUAUccagGGCGGCa -3'
miRNA:   3'- gCUG-----UCACGCuaGugGCGUA----CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 18110 0.66 0.770135
Target:  5'- uCGGCAcgaucGCGGUCGCCGCc-GGCAc- -3'
miRNA:   3'- -GCUGUca---CGCUAGUGGCGuaCCGUug -5'
18975 3' -53.7 NC_004683.1 + 20435 0.71 0.497644
Target:  5'- cCGGCGGUGCaGGggcCACCGCGccgaUGGcCGGCg -3'
miRNA:   3'- -GCUGUCACG-CUa--GUGGCGU----ACC-GUUG- -5'
18975 3' -53.7 NC_004683.1 + 20677 0.67 0.705293
Target:  5'- cCGAUGGUGCcgauguuGAUCGCCGCAccGCcGCc -3'
miRNA:   3'- -GCUGUCACG-------CUAGUGGCGUacCGuUG- -5'
18975 3' -53.7 NC_004683.1 + 21087 0.67 0.759806
Target:  5'- --uCGGUGCuGUCGCUGCGggacggucGGCGACg -3'
miRNA:   3'- gcuGUCACGcUAGUGGCGUa-------CCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 21702 0.68 0.65109
Target:  5'- gGuCGGUGCGggUGgCGC-UGGCAGCg -3'
miRNA:   3'- gCuGUCACGCuaGUgGCGuACCGUUG- -5'
18975 3' -53.7 NC_004683.1 + 22655 0.78 0.211779
Target:  5'- uCGACGcgcGUGCgccgagguGAUCACCGCGcuUGGCAACa -3'
miRNA:   3'- -GCUGU---CACG--------CUAGUGGCGU--ACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.