miRNA display CGI


Results 21 - 40 of 281 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 3041 0.71 0.31236
Target:  5'- cCGGCCGCGGUGAagaaGugGGCCGacgaggucaaCAGCa -3'
miRNA:   3'- aGCCGGUGCUGCUg---CugCUGGC----------GUCG- -5'
18976 3' -58.3 NC_004683.1 + 3186 0.68 0.47645
Target:  5'- gCGGCgGCGGugaGAC-ACGcauuGCCGCGGCa -3'
miRNA:   3'- aGCCGgUGCUg--CUGcUGC----UGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3288 0.68 0.506136
Target:  5'- -aGGCC-CGcCGACGcCuGGCCGaCGGCa -3'
miRNA:   3'- agCCGGuGCuGCUGCuG-CUGGC-GUCG- -5'
18976 3' -58.3 NC_004683.1 + 3320 0.72 0.275609
Target:  5'- gCGGCCAggcccucggacagucCGACGAucacgggggguacacCGGCuGCCGCGGCa -3'
miRNA:   3'- aGCCGGU---------------GCUGCU---------------GCUGcUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3366 0.71 0.31236
Target:  5'- gUCGGCCA-GGCGuCGGCGGgccugcCCGUAGUu -3'
miRNA:   3'- -AGCCGGUgCUGCuGCUGCU------GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3384 0.67 0.526359
Target:  5'- uUCGGUuguggUACGAcgcCGACGACGuGCCGUuccuGCg -3'
miRNA:   3'- -AGCCG-----GUGCU---GCUGCUGC-UGGCGu---CG- -5'
18976 3' -58.3 NC_004683.1 + 3493 0.67 0.557235
Target:  5'- -gGGCUACGAgccggaauCGGUGGUGGCCGCGGUg -3'
miRNA:   3'- agCCGGUGCU--------GCUGCUGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3578 0.66 0.599141
Target:  5'- gCGGCCACcacCGAUucCGGCuCGUAGCc -3'
miRNA:   3'- aGCCGGUGcu-GCUGcuGCUG-GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3739 0.7 0.393116
Target:  5'- aCGGCCucacccuCGACGGCuACGG-CGCGGUg -3'
miRNA:   3'- aGCCGGu------GCUGCUGcUGCUgGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 3946 0.66 0.619223
Target:  5'- gCGGCCGUGGuCGaacugcaccuuggGCGGCGACuCGCGGa -3'
miRNA:   3'- aGCCGGUGCU-GC-------------UGCUGCUG-GCGUCg -5'
18976 3' -58.3 NC_004683.1 + 4104 0.71 0.327453
Target:  5'- aUGGCCuuacCGGCGAUGGCGucucgaACCGgGGCc -3'
miRNA:   3'- aGCCGGu---GCUGCUGCUGC------UGGCgUCG- -5'
18976 3' -58.3 NC_004683.1 + 4445 0.71 0.31984
Target:  5'- cCGGCCGagucCGACGACG--CGCAGCg -3'
miRNA:   3'- aGCCGGUgcu-GCUGCUGCugGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 4732 0.67 0.556197
Target:  5'- -gGGCCACGcuugcccAUGcCGAUGGCaCGCAGg -3'
miRNA:   3'- agCCGGUGC-------UGCuGCUGCUG-GCGUCg -5'
18976 3' -58.3 NC_004683.1 + 4927 0.66 0.609702
Target:  5'- aUCGGCaagccucaGA--GCGGCGGCCaGCGGCg -3'
miRNA:   3'- -AGCCGgug-----CUgcUGCUGCUGG-CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 4987 0.69 0.438271
Target:  5'- -gGcGCCGUGGCGACuACGACCGCGacGCc -3'
miRNA:   3'- agC-CGGUGCUGCUGcUGCUGGCGU--CG- -5'
18976 3' -58.3 NC_004683.1 + 5032 0.67 0.536585
Target:  5'- cCGGCCuCGACG-CGcAUGcGCCGCuGGCc -3'
miRNA:   3'- aGCCGGuGCUGCuGC-UGC-UGGCG-UCG- -5'
18976 3' -58.3 NC_004683.1 + 5322 0.66 0.609702
Target:  5'- -aGGUaCGcCGGCGACGACG-UCGCcaGGCa -3'
miRNA:   3'- agCCG-GU-GCUGCUGCUGCuGGCG--UCG- -5'
18976 3' -58.3 NC_004683.1 + 5473 0.69 0.419849
Target:  5'- cCGGCgauguguggCACGGCGuguccuCGGCGGCCguGCAGUg -3'
miRNA:   3'- aGCCG---------GUGCUGCu-----GCUGCUGG--CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 5851 0.66 0.588607
Target:  5'- cUCGGCggugacuggaGCGAucuCGGCGGCGGugcCCGCgAGCg -3'
miRNA:   3'- -AGCCGg---------UGCU---GCUGCUGCU---GGCG-UCG- -5'
18976 3' -58.3 NC_004683.1 + 6385 0.68 0.506136
Target:  5'- cCGGCgAccuguuCGACGACaGCGAcaCCGCGGUc -3'
miRNA:   3'- aGCCGgU------GCUGCUGcUGCU--GGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.