miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 110 0.68 0.466747
Target:  5'- -aGGCCAgGuucuGCGGCG-CGACCuGCAGa -3'
miRNA:   3'- agCCGGUgC----UGCUGCuGCUGG-CGUCg -5'
18976 3' -58.3 NC_004683.1 + 172 0.68 0.47645
Target:  5'- cUGGCCugGGucucuuugccuCGaACGGCGuGCCGCAGa -3'
miRNA:   3'- aGCCGGugCU-----------GC-UGCUGC-UGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 271 0.75 0.18502
Target:  5'- cUGGUCGCGACGGUGGucaaggagcUGACCGCGGCc -3'
miRNA:   3'- aGCCGGUGCUGCUGCU---------GCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 323 0.69 0.437339
Target:  5'- --cGCCGCGggcagcaGCGGCGGC-AUCGCGGCg -3'
miRNA:   3'- agcCGGUGC-------UGCUGCUGcUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 325 0.66 0.617106
Target:  5'- cUCGGCCAgcaggcgcugcgguUGGCGAUG-CGGCUGgAGa -3'
miRNA:   3'- -AGCCGGU--------------GCUGCUGCuGCUGGCgUCg -5'
18976 3' -58.3 NC_004683.1 + 651 0.71 0.351093
Target:  5'- aUGGCCGguCGACGGCGuuCGAguucguggucaUCGCGGCg -3'
miRNA:   3'- aGCCGGU--GCUGCUGCu-GCU-----------GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 772 0.73 0.263718
Target:  5'- gUCGGCgCACGAgaUGACGcCGACaCGCgaGGCa -3'
miRNA:   3'- -AGCCG-GUGCU--GCUGCuGCUG-GCG--UCG- -5'
18976 3' -58.3 NC_004683.1 + 1211 0.68 0.506136
Target:  5'- cCGGCCGCGcuUGACGA--GCUuguGCAGCa -3'
miRNA:   3'- aGCCGGUGCu-GCUGCUgcUGG---CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 1355 0.66 0.599141
Target:  5'- gUUGGCCAUGAUGAUGuacuCGcGCuuguccauugCGCAGCc -3'
miRNA:   3'- -AGCCGGUGCUGCUGCu---GC-UG----------GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 1369 0.67 0.546879
Target:  5'- uUCGGCCGCGAgCGccuCGGCuGGCaCGacaAGCc -3'
miRNA:   3'- -AGCCGGUGCU-GCu--GCUG-CUG-GCg--UCG- -5'
18976 3' -58.3 NC_004683.1 + 1519 0.67 0.525341
Target:  5'- gCGGCgGCGAuCGGCGugG-CCGgguaucgcgaggaCGGCa -3'
miRNA:   3'- aGCCGgUGCU-GCUGCugCuGGC-------------GUCG- -5'
18976 3' -58.3 NC_004683.1 + 1597 0.7 0.359238
Target:  5'- cCGGCCACGcCGAUcGCcGCCGCugucuGCa -3'
miRNA:   3'- aGCCGGUGCuGCUGcUGcUGGCGu----CG- -5'
18976 3' -58.3 NC_004683.1 + 1662 0.74 0.199922
Target:  5'- gCGGCCGUG-CGGuuggggccuCGACGAUCGCAGCg -3'
miRNA:   3'- aGCCGGUGCuGCU---------GCUGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 1671 0.67 0.526359
Target:  5'- cCGGCaAUGugG-CGACGuuGCCGCcGCg -3'
miRNA:   3'- aGCCGgUGCugCuGCUGC--UGGCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 1729 0.67 0.546879
Target:  5'- cUCGGCUucgagguCGGCGACGAggUGACaaaCGGCg -3'
miRNA:   3'- -AGCCGGu------GCUGCUGCU--GCUGgc-GUCG- -5'
18976 3' -58.3 NC_004683.1 + 2209 0.69 0.432695
Target:  5'- aCGGCCACGcccgccaccaccaggGCGAUGGCcacgacuaccACCGCAGg -3'
miRNA:   3'- aGCCGGUGC---------------UGCUGCUGc---------UGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 2282 0.7 0.367513
Target:  5'- aCGGCaCGCGGCacaGGCGGUCGCGGCc -3'
miRNA:   3'- aGCCG-GUGCUGcugCUGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 2355 0.66 0.578106
Target:  5'- aUCGGCUACGGguuCGGuggUGGCGucCCGCGGa -3'
miRNA:   3'- -AGCCGGUGCU---GCU---GCUGCu-GGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 2755 0.78 0.108667
Target:  5'- gCGGCCGCGGCGAgcuCGGCgGCGGCc -3'
miRNA:   3'- aGCCGGUGCUGCUgcuGCUGgCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 2840 0.67 0.557235
Target:  5'- gUUGGCCGcCGcCGAgcuCGccGCGGCCGCcGCg -3'
miRNA:   3'- -AGCCGGU-GCuGCU---GC--UGCUGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.