miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 20582 0.66 0.578106
Target:  5'- cUGGUgGCGGCGguGCGGCGAUCaacauCGGCa -3'
miRNA:   3'- aGCCGgUGCUGC--UGCUGCUGGc----GUCG- -5'
18976 3' -58.3 NC_004683.1 + 47067 0.66 0.577058
Target:  5'- aCGGCCAccCGACGAuCGACGucGaggauguccuguuCCGCAuGCu -3'
miRNA:   3'- aGCCGGU--GCUGCU-GCUGC--U-------------GGCGU-CG- -5'
18976 3' -58.3 NC_004683.1 + 47587 0.66 0.609702
Target:  5'- aCGGCUGCGugG-CGGCGuucggGCCGaugcuGCa -3'
miRNA:   3'- aGCCGGUGCugCuGCUGC-----UGGCgu---CG- -5'
18976 3' -58.3 NC_004683.1 + 12415 0.66 0.603363
Target:  5'- cUGGCCACcGCGcgccagcaggucACGAUGGCCGaacgucaguaugucuCAGCg -3'
miRNA:   3'- aGCCGGUGcUGC------------UGCUGCUGGC---------------GUCG- -5'
18976 3' -58.3 NC_004683.1 + 13864 0.66 0.588607
Target:  5'- -aGGaCCGCGcCGGCGcUGACaucaCGCGGCa -3'
miRNA:   3'- agCC-GGUGCuGCUGCuGCUG----GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 14746 0.66 0.587555
Target:  5'- gCGGCCaACGAucUGugGGCGcguauggGCCGCAa- -3'
miRNA:   3'- aGCCGG-UGCU--GCugCUGC-------UGGCGUcg -5'
18976 3' -58.3 NC_004683.1 + 41214 0.66 0.588607
Target:  5'- -aGGCCGC--CGAgGACG-CCGCcaAGCa -3'
miRNA:   3'- agCCGGUGcuGCUgCUGCuGGCG--UCG- -5'
18976 3' -58.3 NC_004683.1 + 30818 0.66 0.63087
Target:  5'- gCGGCCGuCGAUGGgcuacuCGAUGAgCguGCAGCc -3'
miRNA:   3'- aGCCGGU-GCUGCU------GCUGCUgG--CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 26481 0.66 0.578106
Target:  5'- cCGaGCCcgauACGcCGACGAgGAcugauguccgacCCGCAGCu -3'
miRNA:   3'- aGC-CGG----UGCuGCUGCUgCU------------GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 55077 0.66 0.578106
Target:  5'- cCGGCCucaccucguuccGCuACGGCGACGuaUGCGGCu -3'
miRNA:   3'- aGCCGG------------UGcUGCUGCUGCugGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 21601 0.66 0.588607
Target:  5'- aUCGG-CGCGugGGgugagGGCGGCUGgGGCg -3'
miRNA:   3'- -AGCCgGUGCugCUg----CUGCUGGCgUCG- -5'
18976 3' -58.3 NC_004683.1 + 18636 0.66 0.588607
Target:  5'- cUGGcCCugGugGGguucuucgugccCGGCGACCucgguGCGGCg -3'
miRNA:   3'- aGCC-GGugCugCU------------GCUGCUGG-----CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 28641 0.66 0.599141
Target:  5'- aCGGCCgagacuugGCGGCGcuCGGCGugccgucuccuACCGCGGa -3'
miRNA:   3'- aGCCGG--------UGCUGCu-GCUGC-----------UGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 21775 0.66 0.599141
Target:  5'- gCGGCCAcCGAUGGuugguCGgguACGGCCacggGCGGCg -3'
miRNA:   3'- aGCCGGU-GCUGCU-----GC---UGCUGG----CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 25234 0.66 0.588607
Target:  5'- gUCGGUgCGCGGCGugcUGACcaacaucCCGCAGCu -3'
miRNA:   3'- -AGCCG-GUGCUGCu--GCUGcu-----GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 2355 0.66 0.578106
Target:  5'- aUCGGCUACGGguuCGGuggUGGCGucCCGCGGa -3'
miRNA:   3'- -AGCCGGUGCU---GCU---GCUGCu-GGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 55823 0.66 0.609702
Target:  5'- cUCGGCgAC-AUGGCGACGuucaacuacAUCGCAcGCa -3'
miRNA:   3'- -AGCCGgUGcUGCUGCUGC---------UGGCGU-CG- -5'
18976 3' -58.3 NC_004683.1 + 39480 0.66 0.578106
Target:  5'- aCGuuGCCGCGuACGGCGAUcuaacGCCGCgaGGCg -3'
miRNA:   3'- aGC--CGGUGC-UGCUGCUGc----UGGCG--UCG- -5'
18976 3' -58.3 NC_004683.1 + 23053 0.66 0.599141
Target:  5'- cUCGGUguCGGCcugcuCGGCGGCCuGguGCu -3'
miRNA:   3'- -AGCCGguGCUGcu---GCUGCUGG-CguCG- -5'
18976 3' -58.3 NC_004683.1 + 9469 0.66 0.599141
Target:  5'- cUCGGCgACGGCGagGCGugGGa-GCuGCc -3'
miRNA:   3'- -AGCCGgUGCUGC--UGCugCUggCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.