miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 56761 1.1 0.000528
Target:  5'- cUCGGCCACGACGACGACGACCGCAGCc -3'
miRNA:   3'- -AGCCGGUGCUGCUGCUGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 20300 0.93 0.010195
Target:  5'- cCGGCCGgGGCGGCGACGGCgGCAGCg -3'
miRNA:   3'- aGCCGGUgCUGCUGCUGCUGgCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 24109 0.85 0.037792
Target:  5'- cUCGGCaagguCGACGACGGCaGCCGCGGCa -3'
miRNA:   3'- -AGCCGgu---GCUGCUGCUGcUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 10057 0.84 0.041597
Target:  5'- uUCGGCCGCGGCGGCGAcugguCGAuccucaagaagaugaCCGCAGCc -3'
miRNA:   3'- -AGCCGGUGCUGCUGCU-----GCU---------------GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 44431 0.81 0.076074
Target:  5'- gUCGGCCGuCGGCuuGACGGuCGACgGCAGCg -3'
miRNA:   3'- -AGCCGGU-GCUG--CUGCU-GCUGgCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 22424 0.81 0.076074
Target:  5'- cUCGGCCugGuCGGCGACGGCgCGUaugGGCu -3'
miRNA:   3'- -AGCCGGugCuGCUGCUGCUG-GCG---UCG- -5'
18976 3' -58.3 NC_004683.1 + 51822 0.8 0.089755
Target:  5'- cUCGGCgAgGGCGGCGcggcacuggucGCGGCCGUAGCa -3'
miRNA:   3'- -AGCCGgUgCUGCUGC-----------UGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 25627 0.79 0.097444
Target:  5'- gCGGCCAgGGCGGCGACcaGGCCGagccaCAGCg -3'
miRNA:   3'- aGCCGGUgCUGCUGCUG--CUGGC-----GUCG- -5'
18976 3' -58.3 NC_004683.1 + 2755 0.78 0.108667
Target:  5'- gCGGCCGCGGCGAgcuCGGCgGCGGCc -3'
miRNA:   3'- aGCCGGUGCUGCUgcuGCUGgCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 46607 0.78 0.117868
Target:  5'- -gGGCCGCGACGGCaa-GGCCGCcGCg -3'
miRNA:   3'- agCCGGUGCUGCUGcugCUGGCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 21567 0.78 0.121093
Target:  5'- -gGGCgGCGGCGGUGGCGGgCGCGGCa -3'
miRNA:   3'- agCCGgUGCUGCUGCUGCUgGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 24917 0.77 0.130916
Target:  5'- gUGGCUGCuGCGGCugaucaccaacguGACGACCGCGGCg -3'
miRNA:   3'- aGCCGGUGcUGCUG-------------CUGCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 48844 0.77 0.131267
Target:  5'- cUGGCCGCGAacuCGACGGCCGCAc- -3'
miRNA:   3'- aGCCGGUGCUgcuGCUGCUGGCGUcg -5'
18976 3' -58.3 NC_004683.1 + 40962 0.77 0.142225
Target:  5'- gUCGGCCACGcCGACc-UGGCCGCGcGCa -3'
miRNA:   3'- -AGCCGGUGCuGCUGcuGCUGGCGU-CG- -5'
18976 3' -58.3 NC_004683.1 + 24781 0.77 0.14606
Target:  5'- gCGGUCGCGGCGGCGcGCGGCCaUGGCc -3'
miRNA:   3'- aGCCGGUGCUGCUGC-UGCUGGcGUCG- -5'
18976 3' -58.3 NC_004683.1 + 25971 0.76 0.149988
Target:  5'- gCGGCCAgcgucugccCGGCGAacuCGACGccgaGCCGCAGCc -3'
miRNA:   3'- aGCCGGU---------GCUGCU---GCUGC----UGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 25573 0.76 0.154013
Target:  5'- gUCGGCaACGGC-ACGGCGGCCGUcGCa -3'
miRNA:   3'- -AGCCGgUGCUGcUGCUGCUGGCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 6875 0.76 0.162358
Target:  5'- aCGGCCGCugGACGGCGcGCGACgGC-GCg -3'
miRNA:   3'- aGCCGGUG--CUGCUGC-UGCUGgCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 24375 0.76 0.166244
Target:  5'- gCGGUCGCGAucaccggugucuuCGACGAgGccACCGCGGCg -3'
miRNA:   3'- aGCCGGUGCU-------------GCUGCUgC--UGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 45140 0.76 0.166681
Target:  5'- cUGGCCACGcuaucucagcACGGgcUGGcCGACCGCAGCg -3'
miRNA:   3'- aGCCGGUGC----------UGCU--GCU-GCUGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.