Results 1 - 20 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18976 | 3' | -58.3 | NC_004683.1 | + | 23711 | 0.74 | 0.205117 |
Target: 5'- uUCcGCCGCGGCGGCacCGGCgGCGGCa -3' miRNA: 3'- -AGcCGGUGCUGCUGcuGCUGgCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 6875 | 0.76 | 0.162358 |
Target: 5'- aCGGCCGCugGACGGCGcGCGACgGC-GCg -3' miRNA: 3'- aGCCGGUG--CUGCUGC-UGCUGgCGuCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 24375 | 0.76 | 0.166244 |
Target: 5'- gCGGUCGCGAucaccggugucuuCGACGAgGccACCGCGGCg -3' miRNA: 3'- aGCCGGUGCU-------------GCUGCUgC--UGGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 27192 | 0.76 | 0.166681 |
Target: 5'- aCGGCguaGCGGCGAUGACuGCCGCgcuGGCg -3' miRNA: 3'- aGCCGg--UGCUGCUGCUGcUGGCG---UCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 45140 | 0.76 | 0.166681 |
Target: 5'- cUGGCCACGcuaucucagcACGGgcUGGcCGACCGCAGCg -3' miRNA: 3'- aGCCGGUGC----------UGCU--GCU-GCUGGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 42620 | 0.75 | 0.175637 |
Target: 5'- gUCGGCgACcGCGACGACGcCCGCgacgagaucGGCg -3' miRNA: 3'- -AGCCGgUGcUGCUGCUGCuGGCG---------UCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 24807 | 0.75 | 0.177479 |
Target: 5'- uUCGGCgACGGCGGCGaguucgagcugauccGCGACCGgcucaaCGGCg -3' miRNA: 3'- -AGCCGgUGCUGCUGC---------------UGCUGGC------GUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 271 | 0.75 | 0.18502 |
Target: 5'- cUGGUCGCGACGGUGGucaaggagcUGACCGCGGCc -3' miRNA: 3'- aGCCGGUGCUGCUGCU---------GCUGGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 1662 | 0.74 | 0.199922 |
Target: 5'- gCGGCCGUG-CGGuuggggccuCGACGAUCGCAGCg -3' miRNA: 3'- aGCCGGUGCuGCU---------GCUGCUGGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 25573 | 0.76 | 0.154013 |
Target: 5'- gUCGGCaACGGC-ACGGCGGCCGUcGCa -3' miRNA: 3'- -AGCCGgUGCUGcUGCUGCUGGCGuCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 40962 | 0.77 | 0.142225 |
Target: 5'- gUCGGCCACGcCGACc-UGGCCGCGcGCa -3' miRNA: 3'- -AGCCGGUGCuGCUGcuGCUGGCGU-CG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 48844 | 0.77 | 0.131267 |
Target: 5'- cUGGCCGCGAacuCGACGGCCGCAc- -3' miRNA: 3'- aGCCGGUGCUgcuGCUGCUGGCGUcg -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 20300 | 0.93 | 0.010195 |
Target: 5'- cCGGCCGgGGCGGCGACGGCgGCAGCg -3' miRNA: 3'- aGCCGGUgCUGCUGCUGCUGgCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 24109 | 0.85 | 0.037792 |
Target: 5'- cUCGGCaagguCGACGACGGCaGCCGCGGCa -3' miRNA: 3'- -AGCCGgu---GCUGCUGCUGcUGGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 10057 | 0.84 | 0.041597 |
Target: 5'- uUCGGCCGCGGCGGCGAcugguCGAuccucaagaagaugaCCGCAGCc -3' miRNA: 3'- -AGCCGGUGCUGCUGCU-----GCU---------------GGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 22424 | 0.81 | 0.076074 |
Target: 5'- cUCGGCCugGuCGGCGACGGCgCGUaugGGCu -3' miRNA: 3'- -AGCCGGugCuGCUGCUGCUG-GCG---UCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 2755 | 0.78 | 0.108667 |
Target: 5'- gCGGCCGCGGCGAgcuCGGCgGCGGCc -3' miRNA: 3'- aGCCGGUGCUGCUgcuGCUGgCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 46607 | 0.78 | 0.117868 |
Target: 5'- -gGGCCGCGACGGCaa-GGCCGCcGCg -3' miRNA: 3'- agCCGGUGCUGCUGcugCUGGCGuCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 21567 | 0.78 | 0.121093 |
Target: 5'- -gGGCgGCGGCGGUGGCGGgCGCGGCa -3' miRNA: 3'- agCCGgUGCUGCUGCUGCUgGCGUCG- -5' |
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18976 | 3' | -58.3 | NC_004683.1 | + | 24917 | 0.77 | 0.130916 |
Target: 5'- gUGGCUGCuGCGGCugaucaccaacguGACGACCGCGGCg -3' miRNA: 3'- aGCCGGUGcUGCUG-------------CUGCUGGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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