miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 5' -56.4 NC_004683.1 + 18221 0.66 0.659922
Target:  5'- gGGGUCcggCCGccacggcgugcgguaGGUGCCGGCG--GCGACCg -3'
miRNA:   3'- -UCCAG---GGC---------------UCGUGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 18634 0.68 0.525948
Target:  5'- cGGUgUCGgcaggcugauGGCGCCGGUuggGUUGUAACCa -3'
miRNA:   3'- uCCAgGGC----------UCGUGGUCG---CAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 18897 0.67 0.601016
Target:  5'- gAGGcggCCCGGgaguucgugcGCACCGuCG-UGCAACCg -3'
miRNA:   3'- -UCCa--GGGCU----------CGUGGUcGCaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 20198 0.71 0.362783
Target:  5'- cGGaUCCaguuGCACC-GCGUUGUAGCCg -3'
miRNA:   3'- uCC-AGGgcu-CGUGGuCGCAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 20240 0.7 0.416376
Target:  5'- cGGUgCCGGGUAUCGGCGcgaucaGCAACg -3'
miRNA:   3'- uCCAgGGCUCGUGGUCGCaa----CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 20406 0.69 0.491752
Target:  5'- cGGcgcaCCCGgggcggccaacggcGGCACCGGCGgUGCAgggGCCa -3'
miRNA:   3'- uCCa---GGGC--------------UCGUGGUCGCaACGU---UGG- -5'
18976 5' -56.4 NC_004683.1 + 21383 0.69 0.483615
Target:  5'- gAGGU-CCGAGCcgaacacACCgGGCGUUGCGaggucagcACCg -3'
miRNA:   3'- -UCCAgGGCUCG-------UGG-UCGCAACGU--------UGG- -5'
18976 5' -56.4 NC_004683.1 + 21425 0.69 0.454684
Target:  5'- uGGUCaCCGAcagcgGCGCCGGCGcagacacUGCuACCg -3'
miRNA:   3'- uCCAG-GGCU-----CGUGGUCGCa------ACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 21923 0.67 0.579315
Target:  5'- cGGGcaaUCCCG-GCAauccgcCCGGCGguggcggGCGGCCg -3'
miRNA:   3'- -UCC---AGGGCuCGU------GGUCGCaa-----CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 23289 0.67 0.61191
Target:  5'- cGGUCCCcGGCACgAGCaucGUcaucccgcUGCAGCg -3'
miRNA:   3'- uCCAGGGcUCGUGgUCG---CA--------ACGUUGg -5'
18976 5' -56.4 NC_004683.1 + 23326 0.71 0.354328
Target:  5'- cGGcaUCCCGAGcCGCaucaugaaGGCGUUcGCGGCCg -3'
miRNA:   3'- uCC--AGGGCUC-GUGg-------UCGCAA-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 23698 0.69 0.488693
Target:  5'- cGGGUUCuCGAcguuccgccgcggcgGCACCGGCGgcgGCAccACCc -3'
miRNA:   3'- -UCCAGG-GCU---------------CGUGGUCGCaa-CGU--UGG- -5'
18976 5' -56.4 NC_004683.1 + 23888 0.7 0.439128
Target:  5'- aAGGUCguugCCGAGUuCCAGCGccgcguaggcgugGCGGCCg -3'
miRNA:   3'- -UCCAG----GGCUCGuGGUCGCaa-----------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 24786 0.66 0.644658
Target:  5'- gAGGacgcgCUCGAGCACCucuucGGCGacgGCGGCg -3'
miRNA:   3'- -UCCa----GGGCUCGUGG-----UCGCaa-CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 24862 0.66 0.674052
Target:  5'- gAGGUgCUCGAGCGCguccucgaacccguCGGCGgacUGCGaguaGCCg -3'
miRNA:   3'- -UCCA-GGGCUCGUG--------------GUCGCa--ACGU----UGG- -5'
18976 5' -56.4 NC_004683.1 + 25356 0.71 0.346014
Target:  5'- cAGG-CCCGgcAGCgcgGCCAGCagUGCGACCa -3'
miRNA:   3'- -UCCaGGGC--UCG---UGGUCGcaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 26496 0.66 0.653385
Target:  5'- cGGcaCCggCGGGCACCAGCGggaucagggcgGUGACCg -3'
miRNA:   3'- uCCa-GG--GCUCGUGGUCGCaa---------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 30899 0.67 0.587979
Target:  5'- gAGGUCaucgauuCCGAGCugCgcgcacugacGGCGUUccgggcggcgugcGCAGCCg -3'
miRNA:   3'- -UCCAG-------GGCUCGugG----------UCGCAA-------------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 31839 0.66 0.633741
Target:  5'- uGGUCCUGGGCAUCuucgGGUGga-UAACCa -3'
miRNA:   3'- uCCAGGGCUCGUGG----UCGCaacGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 31898 0.68 0.514443
Target:  5'- cGG-CUCGGGCcggugcaGCCAGCGggGCGAgCu -3'
miRNA:   3'- uCCaGGGCUCG-------UGGUCGCaaCGUUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.