Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18976 | 5' | -56.4 | NC_004683.1 | + | 214 | 0.73 | 0.291773 |
Target: 5'- gAGGUCacggaucccacuCCGAGCGCC-GCGaUGCcGCCg -3' miRNA: 3'- -UCCAG------------GGCUCGUGGuCGCaACGuUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 4208 | 0.69 | 0.454684 |
Target: 5'- aAGGUcCCCGAGaucggGCCGGUGacGUGGCCg -3' miRNA: 3'- -UCCA-GGGCUCg----UGGUCGCaaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 6450 | 0.66 | 0.66645 |
Target: 5'- gAGGUCaaugCCGAGCgucgucgcGCCAGCGUcGaggacGCCa -3' miRNA: 3'- -UCCAG----GGCUCG--------UGGUCGCAaCgu---UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 6451 | 0.69 | 0.484629 |
Target: 5'- cAGGUCgCCGGggcGCACCAcGCGggGCAc-- -3' miRNA: 3'- -UCCAG-GGCU---CGUGGU-CGCaaCGUugg -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 7061 | 0.66 | 0.655565 |
Target: 5'- cGGUCUCGAcgucugggcGCGCCGGCcgacgagcUGCAccACCg -3' miRNA: 3'- uCCAGGGCU---------CGUGGUCGca------ACGU--UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 7362 | 0.66 | 0.652295 |
Target: 5'- uGGUCuacgacggcaCCGAGCACCcggaGGCGcucgaccuggauucgGCGGCCg -3' miRNA: 3'- uCCAG----------GGCUCGUGG----UCGCaa-------------CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 9228 | 0.66 | 0.655565 |
Target: 5'- cGGUCCCGccugggacGCGCUGGCcg-GCGACg -3' miRNA: 3'- uCCAGGGCu-------CGUGGUCGcaaCGUUGg -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 10987 | 0.68 | 0.536491 |
Target: 5'- gAGGUCCUGcacCugCAGUGUcUGCAgACCa -3' miRNA: 3'- -UCCAGGGCuc-GugGUCGCA-ACGU-UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 11911 | 0.66 | 0.63374 |
Target: 5'- cGGGcugacUCCUGAGCagcugGCgGGCGUUGauucaGGCCa -3' miRNA: 3'- -UCC-----AGGGCUCG-----UGgUCGCAACg----UUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 12719 | 0.7 | 0.397977 |
Target: 5'- cGGG-CCC-AGCAgCGGCGccGCGGCCa -3' miRNA: 3'- -UCCaGGGcUCGUgGUCGCaaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 12810 | 0.66 | 0.677304 |
Target: 5'- cGGauaCCCGGGCGaugCGGCGcUGCuGGCCa -3' miRNA: 3'- uCCa--GGGCUCGUg--GUCGCaACG-UUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 13004 | 0.67 | 0.568525 |
Target: 5'- cGGcuuccUgCCGGGCGCCGGUGgccccgGCGACUu -3' miRNA: 3'- uCC-----AgGGCUCGUGGUCGCaa----CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 13020 | 0.66 | 0.644659 |
Target: 5'- ----aCCGGcCACCGGUGggGCGGCCg -3' miRNA: 3'- uccagGGCUcGUGGUCGCaaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 13796 | 0.67 | 0.579315 |
Target: 5'- cAGG--CCGcGCACCGGCGaaaccggaUGCGACCu -3' miRNA: 3'- -UCCagGGCuCGUGGUCGCa-------ACGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 13954 | 0.67 | 0.601016 |
Target: 5'- gAGGUgCCGcgugaugucAGCGCCGGCGcgguccucgGUGGCCu -3' miRNA: 3'- -UCCAgGGC---------UCGUGGUCGCaa-------CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 14294 | 0.66 | 0.644659 |
Target: 5'- cGGGUCgCGGccacGCACCAGCaGUUugaucuCAACCu -3' miRNA: 3'- -UCCAGgGCU----CGUGGUCG-CAAc-----GUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 14855 | 0.68 | 0.515485 |
Target: 5'- --aUCCCagGAGcCAUCGGgGUUGCGGCCc -3' miRNA: 3'- uccAGGG--CUC-GUGGUCgCAACGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 15327 | 0.68 | 0.515485 |
Target: 5'- aAGGaCCU---CACCAGCGUUGC-GCCg -3' miRNA: 3'- -UCCaGGGcucGUGGUCGCAACGuUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 17751 | 0.71 | 0.354328 |
Target: 5'- gGGGUCggacuccuUCG-GCACCAGCGUcuCAACCa -3' miRNA: 3'- -UCCAG--------GGCuCGUGGUCGCAacGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 17887 | 0.69 | 0.484629 |
Target: 5'- -cGUCgCCGuGCGCCAGCGgcGUcacguuGACCu -3' miRNA: 3'- ucCAG-GGCuCGUGGUCGCaaCG------UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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