miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 5' -56.4 NC_004683.1 + 46287 0.66 0.63374
Target:  5'- cAGcGUCCCGAuGUugACCGGCugacGCGGCCc -3'
miRNA:   3'- -UC-CAGGGCU-CG--UGGUCGcaa-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 31898 0.68 0.514443
Target:  5'- cGG-CUCGGGCcggugcaGCCAGCGggGCGAgCu -3'
miRNA:   3'- uCCaGGGCUCG-------UGGUCGCaaCGUUgG- -5'
18976 5' -56.4 NC_004683.1 + 15327 0.68 0.515485
Target:  5'- aAGGaCCU---CACCAGCGUUGC-GCCg -3'
miRNA:   3'- -UCCaGGGcucGUGGUCGCAACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 52485 0.68 0.525948
Target:  5'- aGGGUCUCGcGCGCUGGCucgGCAAgCa -3'
miRNA:   3'- -UCCAGGGCuCGUGGUCGcaaCGUUgG- -5'
18976 5' -56.4 NC_004683.1 + 13004 0.67 0.568525
Target:  5'- cGGcuuccUgCCGGGCGCCGGUGgccccgGCGACUu -3'
miRNA:   3'- uCC-----AgGGCUCGUGGUCGCaa----CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 21923 0.67 0.579315
Target:  5'- cGGGcaaUCCCG-GCAauccgcCCGGCGguggcggGCGGCCg -3'
miRNA:   3'- -UCC---AGGGCuCGU------GGUCGCaa-----CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 18897 0.67 0.601016
Target:  5'- gAGGcggCCCGGgaguucgugcGCACCGuCG-UGCAACCg -3'
miRNA:   3'- -UCCa--GGGCU----------CGUGGUcGCaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 52563 0.67 0.610819
Target:  5'- uGGUCgaucugaCCGAGCAgauCCGGCGcgugGuCAACCg -3'
miRNA:   3'- uCCAG-------GGCUCGU---GGUCGCaa--C-GUUGG- -5'
18976 5' -56.4 NC_004683.1 + 23289 0.67 0.61191
Target:  5'- cGGUCCCcGGCACgAGCaucGUcaucccgcUGCAGCg -3'
miRNA:   3'- uCCAGGGcUCGUGgUCG---CA--------ACGUUGg -5'
18976 5' -56.4 NC_004683.1 + 20406 0.69 0.491752
Target:  5'- cGGcgcaCCCGgggcggccaacggcGGCACCGGCGgUGCAgggGCCa -3'
miRNA:   3'- uCCa---GGGC--------------UCGUGGUCGCaACGU---UGG- -5'
18976 5' -56.4 NC_004683.1 + 23698 0.69 0.488693
Target:  5'- cGGGUUCuCGAcguuccgccgcggcgGCACCGGCGgcgGCAccACCc -3'
miRNA:   3'- -UCCAGG-GCU---------------CGUGGUCGCaa-CGU--UGG- -5'
18976 5' -56.4 NC_004683.1 + 56489 0.69 0.484629
Target:  5'- cAGGUCCCGAcGCAugcCCGGCc--GC-ACCg -3'
miRNA:   3'- -UCCAGGGCU-CGU---GGUCGcaaCGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 43851 0.74 0.250768
Target:  5'- cGGUCUCGAGC-CCGGUGUcaacggcgagUGCuACCu -3'
miRNA:   3'- uCCAGGGCUCGuGGUCGCA----------ACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 214 0.73 0.291773
Target:  5'- gAGGUCacggaucccacuCCGAGCGCC-GCGaUGCcGCCg -3'
miRNA:   3'- -UCCAG------------GGCUCGUGGuCGCaACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 23326 0.71 0.354328
Target:  5'- cGGcaUCCCGAGcCGCaucaugaaGGCGUUcGCGGCCg -3'
miRNA:   3'- uCC--AGGGCUC-GUGg-------UCGCAA-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 20240 0.7 0.416376
Target:  5'- cGGUgCCGGGUAUCGGCGcgaucaGCAACg -3'
miRNA:   3'- uCCAgGGCUCGUGGUCGCaa----CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 23888 0.7 0.439128
Target:  5'- aAGGUCguugCCGAGUuCCAGCGccgcguaggcgugGCGGCCg -3'
miRNA:   3'- -UCCAG----GGCUCGuGGUCGCaa-----------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 21425 0.69 0.454684
Target:  5'- uGGUCaCCGAcagcgGCGCCGGCGcagacacUGCuACCg -3'
miRNA:   3'- uCCAG-GGCU-----CGUGGUCGCa------ACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 4208 0.69 0.454684
Target:  5'- aAGGUcCCCGAGaucggGCCGGUGacGUGGCCg -3'
miRNA:   3'- -UCCA-GGGCUCg----UGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 43124 0.69 0.454684
Target:  5'- ---cCCCGAG-ACCGGCG-UGCGGCUg -3'
miRNA:   3'- uccaGGGCUCgUGGUCGCaACGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.