Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18976 | 5' | -56.4 | NC_004683.1 | + | 11911 | 0.66 | 0.63374 |
Target: 5'- cGGGcugacUCCUGAGCagcugGCgGGCGUUGauucaGGCCa -3' miRNA: 3'- -UCC-----AGGGCUCG-----UGgUCGCAACg----UUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 24862 | 0.66 | 0.674052 |
Target: 5'- gAGGUgCUCGAGCGCguccucgaacccguCGGCGgacUGCGaguaGCCg -3' miRNA: 3'- -UCCA-GGGCUCGUG--------------GUCGCa--ACGU----UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 52310 | 0.66 | 0.666451 |
Target: 5'- cGG-CCCGGGuCGCCgaGGCGgaccCGACCg -3' miRNA: 3'- uCCaGGGCUC-GUGG--UCGCaac-GUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 18221 | 0.66 | 0.659922 |
Target: 5'- gGGGUCcggCCGccacggcgugcgguaGGUGCCGGCG--GCGACCg -3' miRNA: 3'- -UCCAG---GGC---------------UCGUGGUCGCaaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 56607 | 0.66 | 0.654475 |
Target: 5'- cAGGUCCaucggugCGGuGCGCCuaccugccauGCGgUGCGGCCg -3' miRNA: 3'- -UCCAGG-------GCU-CGUGGu---------CGCaACGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 26496 | 0.66 | 0.653385 |
Target: 5'- cGGcaCCggCGGGCACCAGCGggaucagggcgGUGACCg -3' miRNA: 3'- uCCa-GG--GCUCGUGGUCGCaa---------CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 13020 | 0.66 | 0.644659 |
Target: 5'- ----aCCGGcCACCGGUGggGCGGCCg -3' miRNA: 3'- uccagGGCUcGUGGUCGCaaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 31839 | 0.66 | 0.633741 |
Target: 5'- uGGUCCUGGGCAUCuucgGGUGga-UAACCa -3' miRNA: 3'- uCCAGGGCUCGUGG----UCGCaacGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 14294 | 0.66 | 0.644659 |
Target: 5'- cGGGUCgCGGccacGCACCAGCaGUUugaucuCAACCu -3' miRNA: 3'- -UCCAGgGCU----CGUGGUCG-CAAc-----GUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 41182 | 0.66 | 0.677304 |
Target: 5'- aAGGcCCCGGccGUGgCAGCGgcGCGggGCCg -3' miRNA: 3'- -UCCaGGGCU--CGUgGUCGCaaCGU--UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 7061 | 0.66 | 0.655565 |
Target: 5'- cGGUCUCGAcgucugggcGCGCCGGCcgacgagcUGCAccACCg -3' miRNA: 3'- uCCAGGGCU---------CGUGGUCGca------ACGU--UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 24786 | 0.66 | 0.644658 |
Target: 5'- gAGGacgcgCUCGAGCACCucuucGGCGacgGCGGCg -3' miRNA: 3'- -UCCa----GGGCUCGUGG-----UCGCaa-CGUUGg -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 7362 | 0.66 | 0.652295 |
Target: 5'- uGGUCuacgacggcaCCGAGCACCcggaGGCGcucgaccuggauucgGCGGCCg -3' miRNA: 3'- uCCAG----------GGCUCGUGG----UCGCaa-------------CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 9228 | 0.66 | 0.655565 |
Target: 5'- cGGUCCCGccugggacGCGCUGGCcg-GCGACg -3' miRNA: 3'- uCCAGGGCu-------CGUGGUCGcaaCGUUGg -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 6450 | 0.66 | 0.66645 |
Target: 5'- gAGGUCaaugCCGAGCgucgucgcGCCAGCGUcGaggacGCCa -3' miRNA: 3'- -UCCAG----GGCUCG--------UGGUCGCAaCgu---UGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 12810 | 0.66 | 0.677304 |
Target: 5'- cGGauaCCCGGGCGaugCGGCGcUGCuGGCCa -3' miRNA: 3'- uCCa--GGGCUCGUg--GUCGCaACG-UUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 39448 | 0.66 | 0.677304 |
Target: 5'- uGGUCCa-AGCccauCCGGCcuUUGCGGCCu -3' miRNA: 3'- uCCAGGgcUCGu---GGUCGc-AACGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 34799 | 0.66 | 0.677304 |
Target: 5'- gGGGUUCCaGGCGCaucuCGUcGCGGCCa -3' miRNA: 3'- -UCCAGGGcUCGUGguc-GCAaCGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 46287 | 0.66 | 0.63374 |
Target: 5'- cAGcGUCCCGAuGUugACCGGCugacGCGGCCc -3' miRNA: 3'- -UC-CAGGGCU-CG--UGGUCGcaa-CGUUGG- -5' |
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18976 | 5' | -56.4 | NC_004683.1 | + | 46490 | 0.67 | 0.594492 |
Target: 5'- uGGUCgaCGGGCACCGguacacguacugggcGCGguaGCGGCCc -3' miRNA: 3'- uCCAGg-GCUCGUGGU---------------CGCaa-CGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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