miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 5' -56.4 NC_004683.1 + 56795 1.12 0.000447
Target:  5'- gAGGUCCCGAGCACCAGCGUUGCAACCg -3'
miRNA:   3'- -UCCAGGGCUCGUGGUCGCAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 47289 0.75 0.198299
Target:  5'- gAGGUCUCGcGCgGCCGGUGggGUGACCg -3'
miRNA:   3'- -UCCAGGGCuCG-UGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 43851 0.74 0.250768
Target:  5'- cGGUCUCGAGC-CCGGUGUcaacggcgagUGCuACCu -3'
miRNA:   3'- uCCAGGGCUCGuGGUCGCA----------ACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 214 0.73 0.291773
Target:  5'- gAGGUCacggaucccacuCCGAGCGCC-GCGaUGCcGCCg -3'
miRNA:   3'- -UCCAG------------GGCUCGUGGuCGCaACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 51968 0.72 0.306561
Target:  5'- gGGGUUCCG-GCGCCAcucacggaucgcGCGguggUGCAGCUc -3'
miRNA:   3'- -UCCAGGGCuCGUGGU------------CGCa---ACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 25356 0.71 0.346014
Target:  5'- cAGG-CCCGgcAGCgcgGCCAGCagUGCGACCa -3'
miRNA:   3'- -UCCaGGGC--UCG---UGGUCGcaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 46668 0.71 0.354328
Target:  5'- cGGcCCuCGAccgGCACCAGCaGcgGCAGCCa -3'
miRNA:   3'- uCCaGG-GCU---CGUGGUCG-CaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 17751 0.71 0.354328
Target:  5'- gGGGUCggacuccuUCG-GCACCAGCGUcuCAACCa -3'
miRNA:   3'- -UCCAG--------GGCuCGUGGUCGCAacGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 23326 0.71 0.354328
Target:  5'- cGGcaUCCCGAGcCGCaucaugaaGGCGUUcGCGGCCg -3'
miRNA:   3'- uCC--AGGGCUC-GUGg-------UCGCAA-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 20198 0.71 0.362783
Target:  5'- cGGaUCCaguuGCACC-GCGUUGUAGCCg -3'
miRNA:   3'- uCC-AGGgcu-CGUGGuCGCAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 12719 0.7 0.397977
Target:  5'- cGGG-CCC-AGCAgCGGCGccGCGGCCa -3'
miRNA:   3'- -UCCaGGGcUCGUgGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 45136 0.7 0.407111
Target:  5'- uGG-CCCacuccAGCGCCAGCGUgUGCAccuugGCCa -3'
miRNA:   3'- uCCaGGGc----UCGUGGUCGCA-ACGU-----UGG- -5'
18976 5' -56.4 NC_004683.1 + 20240 0.7 0.416376
Target:  5'- cGGUgCCGGGUAUCGGCGcgaucaGCAACg -3'
miRNA:   3'- uCCAgGGCUCGUGGUCGCaa----CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 55847 0.7 0.416376
Target:  5'- ---aCCCGAGCGaucuggUCGGCGUggucUGCGGCCa -3'
miRNA:   3'- uccaGGGCUCGU------GGUCGCA----ACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 49436 0.7 0.434329
Target:  5'- cAGGUgCagGGGCACCGGCcgucgugGUgcggGCAGCCg -3'
miRNA:   3'- -UCCAgGg-CUCGUGGUCG-------CAa---CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 55784 0.7 0.435287
Target:  5'- cGGUCgccgCCGAcGaCGCCAGCGUUgaGCAGCg -3'
miRNA:   3'- uCCAG----GGCU-C-GUGGUCGCAA--CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 23888 0.7 0.439128
Target:  5'- aAGGUCguugCCGAGUuCCAGCGccgcguaggcgugGCGGCCg -3'
miRNA:   3'- -UCCAG----GGCUCGuGGUCGCaa-----------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 43124 0.69 0.454684
Target:  5'- ---cCCCGAG-ACCGGCG-UGCGGCUg -3'
miRNA:   3'- uccaGGGCUCgUGGUCGCaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 4208 0.69 0.454684
Target:  5'- aAGGUcCCCGAGaucggGCCGGUGacGUGGCCg -3'
miRNA:   3'- -UCCA-GGGCUCg----UGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 21425 0.69 0.454684
Target:  5'- uGGUCaCCGAcagcgGCGCCGGCGcagacacUGCuACCg -3'
miRNA:   3'- uCCAG-GGCU-----CGUGGUCGCa------ACGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.