miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 52529 0.67 0.34659
Target:  5'- ---cCCGGUGGCgGCCGacaucagacCCCCgGCCUGg -3'
miRNA:   3'- gcauGGCCAUCGgCGGC---------GGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 51448 0.67 0.34659
Target:  5'- cCGUAgcucaugcgcCCGGUGGCCGagGCCCCcaggauggcgACCUGc -3'
miRNA:   3'- -GCAU----------GGCCAUCGGCggCGGGG----------UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 46690 0.67 0.34659
Target:  5'- uCGUACCaaaccGCCGCCGUCgCCGCCg- -3'
miRNA:   3'- -GCAUGGccau-CGGCGGCGG-GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 24546 0.67 0.338941
Target:  5'- uGUGCCGG--GCCGCgauagCGUCCCGgCCa -3'
miRNA:   3'- gCAUGGCCauCGGCG-----GCGGGGUgGGc -5'
18977 3' -63.3 NC_004684.1 + 33927 0.67 0.338941
Target:  5'- uGgcCCcGUuGCCGCCGCCgccgggcacaCCGCCCGc -3'
miRNA:   3'- gCauGGcCAuCGGCGGCGG----------GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 49295 0.67 0.338941
Target:  5'- uCGcGCuCGGUGGCCuuGCCGUCCaggaucgACCCGu -3'
miRNA:   3'- -GCaUG-GCCAUCGG--CGGCGGGg------UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 24934 0.67 0.338941
Target:  5'- aCGgcCCGGUGGCgcuaCCGCUgCCGCCCu -3'
miRNA:   3'- -GCauGGCCAUCGgc--GGCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 53341 0.67 0.331416
Target:  5'- --cACCGG-AGCgCGCCGggaucaCCUACCCGu -3'
miRNA:   3'- gcaUGGCCaUCG-GCGGCg-----GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 34377 0.67 0.331416
Target:  5'- uGUcGCCGGaca-CGCCGCCCUugCUGa -3'
miRNA:   3'- gCA-UGGCCaucgGCGGCGGGGugGGC- -5'
18977 3' -63.3 NC_004684.1 + 25926 0.67 0.324014
Target:  5'- --cGCCGaGcaucUGGCCGCCgaugccguucugGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGC-C----AUCGGCGG------------CGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 58263 0.67 0.324014
Target:  5'- gGUGCUGGUGGCgGCacaGUCgCACCgGc -3'
miRNA:   3'- gCAUGGCCAUCGgCGg--CGGgGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 4982 0.67 0.324014
Target:  5'- --gGCCGGUGGCgaccagGCCGCCUgAgCCGc -3'
miRNA:   3'- gcaUGGCCAUCGg-----CGGCGGGgUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 22270 0.67 0.324014
Target:  5'- --aGgCGGUcGCCGCCGCCgUgGCCCu -3'
miRNA:   3'- gcaUgGCCAuCGGCGGCGG-GgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 31374 0.68 0.316736
Target:  5'- gGUACggCGGUAGCCGCCgacgaugcgGUUCCAgguguCCCGg -3'
miRNA:   3'- gCAUG--GCCAUCGGCGG---------CGGGGU-----GGGC- -5'
18977 3' -63.3 NC_004684.1 + 66590 0.68 0.316736
Target:  5'- gCGgcCCGcGaGGCCGCCGCCaaggccuagccgCCACCgGg -3'
miRNA:   3'- -GCauGGC-CaUCGGCGGCGG------------GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 27536 0.68 0.312429
Target:  5'- --cGCCGGUGGUggcaccgcgcuccaaUGCCGCCaCCAUgCGg -3'
miRNA:   3'- gcaUGGCCAUCG---------------GCGGCGG-GGUGgGC- -5'
18977 3' -63.3 NC_004684.1 + 48151 0.68 0.309582
Target:  5'- --aACCGGUGGUCGaaaCCGCCauccgcaugcgCCGCCUGa -3'
miRNA:   3'- gcaUGGCCAUCGGC---GGCGG-----------GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 61164 0.68 0.309582
Target:  5'- gCGUugCGG-AGacaaUGCCGCCaCCGgCCCGu -3'
miRNA:   3'- -GCAugGCCaUCg---GCGGCGG-GGU-GGGC- -5'
18977 3' -63.3 NC_004684.1 + 62015 0.68 0.309582
Target:  5'- --gGCgGGU-GCCGUgGCCCgCACCCc -3'
miRNA:   3'- gcaUGgCCAuCGGCGgCGGG-GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 58902 0.68 0.302552
Target:  5'- --cACCGucucGCCGuccCCGCCCCACCCc -3'
miRNA:   3'- gcaUGGCcau-CGGC---GGCGGGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.