miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 37599 0.66 0.38666
Target:  5'- gGUACCGuGcgGGCCcgGCCGCCCaugCCGa -3'
miRNA:   3'- gCAUGGC-Ca-UCGG--CGGCGGGgugGGC- -5'
18977 3' -63.3 NC_004684.1 + 39090 0.66 0.38666
Target:  5'- --gGCCGGUGG-UGCCuaCgCACCCGg -3'
miRNA:   3'- gcaUGGCCAUCgGCGGcgGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 55087 0.66 0.378406
Target:  5'- cCGUuuGCCGcaggAGCCGuCCGCUguggucggcggCCACCCGu -3'
miRNA:   3'- -GCA--UGGCca--UCGGC-GGCGG-----------GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 43632 0.66 0.378406
Target:  5'- gGUACCucaccguucggaGGUggcgcAGCCaCCGCuCCCGCCCc -3'
miRNA:   3'- gCAUGG------------CCA-----UCGGcGGCG-GGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 1631 0.66 0.378406
Target:  5'- gGUugUGGgGGCCGCUGgUgCCACCuCGg -3'
miRNA:   3'- gCAugGCCaUCGGCGGC-GgGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 27034 0.66 0.378406
Target:  5'- gGUGCCGGUGGCauuguGuCCaGCCUCAUCUc -3'
miRNA:   3'- gCAUGGCCAUCGg----C-GG-CGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 50114 0.66 0.378406
Target:  5'- --cACCGGccacGCUGCCGCCgacggugcgcaCACCCGg -3'
miRNA:   3'- gcaUGGCCau--CGGCGGCGGg----------GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 16460 0.66 0.377587
Target:  5'- uGUGCCGGguguacucGGCCGCCagcuugucggccaGCgCCAgCCGc -3'
miRNA:   3'- gCAUGGCCa-------UCGGCGG-------------CGgGGUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 52457 0.66 0.37027
Target:  5'- --cACCGGgauGCCcgacggcaugGCCGCCaCCACCUc -3'
miRNA:   3'- gcaUGGCCau-CGG----------CGGCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 54253 0.66 0.37027
Target:  5'- cCGcGCCGGgacAGCUccucaGCCagcGCCgCCACCCGg -3'
miRNA:   3'- -GCaUGGCCa--UCGG-----CGG---CGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 63298 0.66 0.37027
Target:  5'- --cGCCGGUGGCCgagaagaugggGCCGUUCgGCCgCGu -3'
miRNA:   3'- gcaUGGCCAUCGG-----------CGGCGGGgUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 30873 0.66 0.37027
Target:  5'- gGUGCCGGacAGCaGCa--CCCACCCGu -3'
miRNA:   3'- gCAUGGCCa-UCGgCGgcgGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25765 0.67 0.362255
Target:  5'- gCGUugccGCCGuaGGUCG-CGCCCUGCCCGg -3'
miRNA:   3'- -GCA----UGGCcaUCGGCgGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 60268 0.67 0.362255
Target:  5'- uGUACCucggcGGUGGCgGuuGCgUgGCCCGg -3'
miRNA:   3'- gCAUGG-----CCAUCGgCggCGgGgUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 15163 0.67 0.354362
Target:  5'- cCGcGCCGauaaGGCCGUCGaCCUCAUCCGg -3'
miRNA:   3'- -GCaUGGCca--UCGGCGGC-GGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 3912 0.67 0.354362
Target:  5'- gGUACCGGgaAGaCC-CCGCUgaCCACCUGg -3'
miRNA:   3'- gCAUGGCCa-UC-GGcGGCGG--GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 28671 0.67 0.354362
Target:  5'- cCG-ACCGGcaGGCaGCCGCCgCACaCCGg -3'
miRNA:   3'- -GCaUGGCCa-UCGgCGGCGGgGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 52529 0.67 0.34659
Target:  5'- ---cCCGGUGGCgGCCGacaucagacCCCCgGCCUGg -3'
miRNA:   3'- gcauGGCCAUCGgCGGC---------GGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 47128 0.67 0.34659
Target:  5'- gCGUGCgccuCGGUGGCguagGCgGCCCCgguGCCCa -3'
miRNA:   3'- -GCAUG----GCCAUCGg---CGgCGGGG---UGGGc -5'
18977 3' -63.3 NC_004684.1 + 46690 0.67 0.34659
Target:  5'- uCGUACCaaaccGCCGCCGUCgCCGCCg- -3'
miRNA:   3'- -GCAUGGccau-CGGCGGCGG-GGUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.