miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 42959 0.66 0.403521
Target:  5'- --gGCCGGgcgugcGGCgGCCugguugGCCCCACCgCGc -3'
miRNA:   3'- gcaUGGCCa-----UCGgCGG------CGGGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 5921 0.66 0.412124
Target:  5'- aCG-ACCGGcUGGCCG-CGCUggCCACCgGg -3'
miRNA:   3'- -GCaUGGCC-AUCGGCgGCGG--GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 63298 0.66 0.37027
Target:  5'- --cGCCGGUGGCCgagaagaugggGCCGUUCgGCCgCGu -3'
miRNA:   3'- gcaUGGCCAUCGG-----------CGGCGGGgUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 1631 0.66 0.378406
Target:  5'- gGUugUGGgGGCCGCUGgUgCCACCuCGg -3'
miRNA:   3'- gCAugGCCaUCGGCGGC-GgGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 54972 0.66 0.412124
Target:  5'- gGUgaACgGGUGGCCGCCGa-CCACagCGg -3'
miRNA:   3'- gCA--UGgCCAUCGGCGGCggGGUGg-GC- -5'
18977 3' -63.3 NC_004684.1 + 24162 0.66 0.403521
Target:  5'- gGUGCaggguccgcaggCGGU-GCCGCCGCCCaaaAUgCCGg -3'
miRNA:   3'- gCAUG------------GCCAuCGGCGGCGGGg--UG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 3453 0.66 0.395032
Target:  5'- ----aCGGUGuUCGCCGUCUCGCCCa -3'
miRNA:   3'- gcaugGCCAUcGGCGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 43589 0.66 0.38666
Target:  5'- -cUGCCGcugcaccuGCUGCCGCUgCGCCCGc -3'
miRNA:   3'- gcAUGGCcau-----CGGCGGCGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 15870 0.66 0.403521
Target:  5'- aCGuUGCCGGU-GUCGCCGCCgcgauaggugCCGCUg- -3'
miRNA:   3'- -GC-AUGGCCAuCGGCGGCGG----------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 47171 0.66 0.395032
Target:  5'- cCGUAgCGGcGGCCaggGCCGCCgCUGCgCGg -3'
miRNA:   3'- -GCAUgGCCaUCGG---CGGCGG-GGUGgGC- -5'
18977 3' -63.3 NC_004684.1 + 39090 0.66 0.38666
Target:  5'- --gGCCGGUGG-UGCCuaCgCACCCGg -3'
miRNA:   3'- gcaUGGCCAUCgGCGGcgGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 13690 0.66 0.42084
Target:  5'- gGUgGCCGGUucgGGCaCGCCGaagaucauCCCgACCCa -3'
miRNA:   3'- gCA-UGGCCA---UCG-GCGGC--------GGGgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 47128 0.67 0.34659
Target:  5'- gCGUGCgccuCGGUGGCguagGCgGCCCCgguGCCCa -3'
miRNA:   3'- -GCAUG----GCCAUCGg---CGgCGGGG---UGGGc -5'
18977 3' -63.3 NC_004684.1 + 49295 0.67 0.338941
Target:  5'- uCGcGCuCGGUGGCCuuGCCGUCCaggaucgACCCGu -3'
miRNA:   3'- -GCaUG-GCCAUCGG--CGGCGGGg------UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 24546 0.67 0.338941
Target:  5'- uGUGCCGG--GCCGCgauagCGUCCCGgCCa -3'
miRNA:   3'- gCAUGGCCauCGGCG-----GCGGGGUgGGc -5'
18977 3' -63.3 NC_004684.1 + 28671 0.67 0.354362
Target:  5'- cCG-ACCGGcaGGCaGCCGCCgCACaCCGg -3'
miRNA:   3'- -GCaUGGCCa-UCGgCGGCGGgGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 52529 0.67 0.34659
Target:  5'- ---cCCGGUGGCgGCCGacaucagacCCCCgGCCUGg -3'
miRNA:   3'- gcauGGCCAUCGgCGGC---------GGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 15163 0.67 0.354362
Target:  5'- cCGcGCCGauaaGGCCGUCGaCCUCAUCCGg -3'
miRNA:   3'- -GCaUGGCca--UCGGCGGC-GGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25300 0.67 0.34659
Target:  5'- gCGUGCCGGUgaAGCCaCCcgguGCCagCGCCUGg -3'
miRNA:   3'- -GCAUGGCCA--UCGGcGG----CGGg-GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25765 0.67 0.362255
Target:  5'- gCGUugccGCCGuaGGUCG-CGCCCUGCCCGg -3'
miRNA:   3'- -GCA----UGGCcaUCGGCgGCGGGGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.