miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 16836 0.71 0.196472
Target:  5'- --aGCgGGUcGCCGCCGCUCUACCg- -3'
miRNA:   3'- gcaUGgCCAuCGGCGGCGGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 61591 0.71 0.201399
Target:  5'- aCGccUCGGUGGUCGaggCGUCCCGCCCGc -3'
miRNA:   3'- -GCauGGCCAUCGGCg--GCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 11372 0.7 0.208476
Target:  5'- gGUGCCGGUgguggcguccaucguGGCCucguucacGCCGaccaCCUACCCGg -3'
miRNA:   3'- gCAUGGCCA---------------UCGG--------CGGCg---GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 47057 0.7 0.211575
Target:  5'- gGUACUGGUGGCaGCCGCUgCGuugcaucauCCCGa -3'
miRNA:   3'- gCAUGGCCAUCGgCGGCGGgGU---------GGGC- -5'
18977 3' -63.3 NC_004684.1 + 51131 0.7 0.216827
Target:  5'- uCGUcACCGGcGGUgGCCGCaUCCugCCGg -3'
miRNA:   3'- -GCA-UGGCCaUCGgCGGCG-GGGugGGC- -5'
18977 3' -63.3 NC_004684.1 + 49282 0.7 0.22219
Target:  5'- cCG-ACCGagcaGGCCGCCGCCgCCGCCg- -3'
miRNA:   3'- -GCaUGGCca--UCGGCGGCGG-GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 55151 0.7 0.22219
Target:  5'- uGUGgCGGUggAGCCGCUGCCggaagCACCCc -3'
miRNA:   3'- gCAUgGCCA--UCGGCGGCGGg----GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 44767 0.7 0.233256
Target:  5'- uGUACCGGcgaCCGUCgggGCCCCGCCaCGa -3'
miRNA:   3'- gCAUGGCCaucGGCGG---CGGGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 19609 0.69 0.238385
Target:  5'- --aGCUGGcguugAGCCagugcguGCCGUCCCACCCa -3'
miRNA:   3'- gcaUGGCCa----UCGG-------CGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 57287 0.69 0.244781
Target:  5'- uGUGaCGGcgAGCCGCaccccggccaGCCCUGCCCGg -3'
miRNA:   3'- gCAUgGCCa-UCGGCGg---------CGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 42853 0.69 0.244781
Target:  5'- aCGaGCgCGGUggggccaaccaGGCCGCCGCa-CGCCCGg -3'
miRNA:   3'- -GCaUG-GCCA-----------UCGGCGGCGggGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 49613 0.69 0.244781
Target:  5'- uCGUugCGGcUGGCCGgUGUCCaGCCCa -3'
miRNA:   3'- -GCAugGCC-AUCGGCgGCGGGgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 12915 0.69 0.256164
Target:  5'- gGUGCCGGUGcGCCgucggccaacuucGCCGCCgucggCACCCc -3'
miRNA:   3'- gCAUGGCCAU-CGG-------------CGGCGGg----GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 35113 0.69 0.256775
Target:  5'- -uUGCUGGUGacccauucgcgcGCCGCaCGCgUCACCCGg -3'
miRNA:   3'- gcAUGGCCAU------------CGGCG-GCGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 20874 0.69 0.256775
Target:  5'- gCGUGCCGGUGGCuuCGggGCCaCCGCCUc -3'
miRNA:   3'- -GCAUGGCCAUCG--GCggCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 36746 0.69 0.269246
Target:  5'- cCGUcCCGGcgcugacGCCGCCaggGCCgCGCCCGg -3'
miRNA:   3'- -GCAuGGCCau-----CGGCGG---CGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 1236 0.69 0.269246
Target:  5'- gCGgcCUGGUcGGUCGCCcgGCCCCgGCCCa -3'
miRNA:   3'- -GCauGGCCA-UCGGCGG--CGGGG-UGGGc -5'
18977 3' -63.3 NC_004684.1 + 33617 0.69 0.269246
Target:  5'- gGUGCCGuacgaccccGCauaGCCGCCaCCGCCCGc -3'
miRNA:   3'- gCAUGGCcau------CGg--CGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 58446 0.69 0.273725
Target:  5'- cCGUGCCGGacccgacugcccgcUgaGGCCagcgcgaacuuGCCGCgCCCGCCCu -3'
miRNA:   3'- -GCAUGGCC--------------A--UCGG-----------CGGCG-GGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 29545 0.69 0.275016
Target:  5'- -uUGCCGGUguaccgauucuggGGCCGCUGCCUUACaaGg -3'
miRNA:   3'- gcAUGGCCA-------------UCGGCGGCGGGGUGggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.