miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 1483 1.09 0.000282
Target:  5'- cCGUACCGGUAGCCGCCGCCCCACCCGg -3'
miRNA:   3'- -GCAUGGCCAUCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 47013 0.76 0.079117
Target:  5'- gGUGCCGucggggaacgacUGGCCuucgcaguaGCCGCCCCACCCGg -3'
miRNA:   3'- gCAUGGCc-----------AUCGG---------CGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 57827 0.75 0.090814
Target:  5'- gGUcCCGGcggugcUGGCCGCCGguaCCCGCCCGa -3'
miRNA:   3'- gCAuGGCC------AUCGGCGGCg--GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 39543 0.75 0.093245
Target:  5'- aCGaGCCaGGUAGCCGCaCGCCUCgGCCUGg -3'
miRNA:   3'- -GCaUGG-CCAUCGGCG-GCGGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 34248 0.75 0.106348
Target:  5'- gCGUGCCGGUgAGCagcaCCGUgCCGCCCGa -3'
miRNA:   3'- -GCAUGGCCA-UCGgc--GGCGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 1132 0.74 0.117751
Target:  5'- --aACCGGU-GCCGCCauuucugGCCCCACgCCGc -3'
miRNA:   3'- gcaUGGCCAuCGGCGG-------CGGGGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 5996 0.74 0.121167
Target:  5'- --aGCCGGUcgugcgcgaucAG-CGCCGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGCCA-----------UCgGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 13094 0.73 0.130958
Target:  5'- gGUucGCgCGGU-GCaCGCCGCCCCACCgGc -3'
miRNA:   3'- gCA--UG-GCCAuCG-GCGGCGGGGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 65541 0.73 0.137532
Target:  5'- gGUACCGGcgcacggUGGCCGCgCGCCgCACgCCa -3'
miRNA:   3'- gCAUGGCC-------AUCGGCG-GCGGgGUG-GGc -5'
18977 3' -63.3 NC_004684.1 + 22438 0.72 0.152761
Target:  5'- --cGCCGcc-GCCGCCGCCaCCGCCUGu -3'
miRNA:   3'- gcaUGGCcauCGGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 43406 0.72 0.1567
Target:  5'- --aACgGGUcGCCGCCGCCgaACCCGa -3'
miRNA:   3'- gcaUGgCCAuCGGCGGCGGggUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 49226 0.72 0.164856
Target:  5'- gGUGCCGGgccgggcgucGGCaCGUCGCCCCACagCGg -3'
miRNA:   3'- gCAUGGCCa---------UCG-GCGGCGGGGUGg-GC- -5'
18977 3' -63.3 NC_004684.1 + 15160 0.72 0.173392
Target:  5'- --aGCUGGccGCCGCCGCCaCgCACCUGg -3'
miRNA:   3'- gcaUGGCCauCGGCGGCGG-G-GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 59988 0.72 0.173392
Target:  5'- --gGCCGGUucgugcGCCGCCGCaucgggguggaCCUGCCCGg -3'
miRNA:   3'- gcaUGGCCAu-----CGGCGGCG-----------GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25449 0.71 0.177806
Target:  5'- --gACCGGguccaucaGGCCGCCGCCaaggCCACCgGg -3'
miRNA:   3'- gcaUGGCCa-------UCGGCGGCGG----GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 28078 0.71 0.182319
Target:  5'- uGUgGCCGG--GCCGCCGCgCgACCCGc -3'
miRNA:   3'- gCA-UGGCCauCGGCGGCGgGgUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 7900 0.71 0.182319
Target:  5'- gCGUGCCcuGGUGGCCGCCaGCCa-GCCgGu -3'
miRNA:   3'- -GCAUGG--CCAUCGGCGG-CGGggUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 9856 0.71 0.186934
Target:  5'- --cGCCGGUgAGCUGCCGCCggauCCCGa -3'
miRNA:   3'- gcaUGGCCA-UCGGCGGCGGggu-GGGC- -5'
18977 3' -63.3 NC_004684.1 + 43546 0.71 0.191651
Target:  5'- --cGCCGcaccuGCUGCCGCCCCGCCg- -3'
miRNA:   3'- gcaUGGCcau--CGGCGGCGGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 66747 0.71 0.195985
Target:  5'- --cGCCGGUgaccgGGCCGCCGCCgaggccaucguggCCACCa- -3'
miRNA:   3'- gcaUGGCCA-----UCGGCGGCGG-------------GGUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.