miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 1132 0.74 0.117751
Target:  5'- --aACCGGU-GCCGCCauuucugGCCCCACgCCGc -3'
miRNA:   3'- gcaUGGCCAuCGGCGG-------CGGGGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 1236 0.69 0.269246
Target:  5'- gCGgcCUGGUcGGUCGCCcgGCCCCgGCCCa -3'
miRNA:   3'- -GCauGGCCA-UCGGCGG--CGGGG-UGGGc -5'
18977 3' -63.3 NC_004684.1 + 1483 1.09 0.000282
Target:  5'- cCGUACCGGUAGCCGCCGCCCCACCCGg -3'
miRNA:   3'- -GCAUGGCCAUCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 1631 0.66 0.378406
Target:  5'- gGUugUGGgGGCCGCUGgUgCCACCuCGg -3'
miRNA:   3'- gCAugGCCaUCGGCGGC-GgGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 2599 0.68 0.295645
Target:  5'- aGUGCCGGgcGUCGuuGaggCCGCCCu -3'
miRNA:   3'- gCAUGGCCauCGGCggCgg-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 3453 0.66 0.395032
Target:  5'- ----aCGGUGuUCGCCGUCUCGCCCa -3'
miRNA:   3'- gcaugGCCAUcGGCGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 3912 0.67 0.354362
Target:  5'- gGUACCGGgaAGaCC-CCGCUgaCCACCUGg -3'
miRNA:   3'- gCAUGGCCa-UC-GGcGGCGG--GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 4982 0.67 0.324014
Target:  5'- --gGCCGGUGGCgaccagGCCGCCUgAgCCGc -3'
miRNA:   3'- gcaUGGCCAUCGg-----CGGCGGGgUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 5921 0.66 0.412124
Target:  5'- aCG-ACCGGcUGGCCG-CGCUggCCACCgGg -3'
miRNA:   3'- -GCaUGGCC-AUCGGCgGCGG--GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 5996 0.74 0.121167
Target:  5'- --aGCCGGUcgugcgcgaucAG-CGCCGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGCCA-----------UCgGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 7673 0.68 0.286183
Target:  5'- --cACCGGguugccgcgcaccAGCCGCaccaGCgCCACCCGg -3'
miRNA:   3'- gcaUGGCCa------------UCGGCGg---CGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 7900 0.71 0.182319
Target:  5'- gCGUGCCcuGGUGGCCGCCaGCCa-GCCgGu -3'
miRNA:   3'- -GCAUGG--CCAUCGGCGG-CGGggUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 9856 0.71 0.186934
Target:  5'- --cGCCGGUgAGCUGCCGCCggauCCCGa -3'
miRNA:   3'- gcaUGGCCA-UCGGCGGCGGggu-GGGC- -5'
18977 3' -63.3 NC_004684.1 + 10148 0.66 0.38666
Target:  5'- uCGUGCUcagccAGCCGCCGCUggCCACCgCGc -3'
miRNA:   3'- -GCAUGGcca--UCGGCGGCGG--GGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 11372 0.7 0.208476
Target:  5'- gGUGCCGGUgguggcguccaucguGGCCucguucacGCCGaccaCCUACCCGg -3'
miRNA:   3'- gCAUGGCCA---------------UCGG--------CGGCg---GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 12915 0.69 0.256164
Target:  5'- gGUGCCGGUGcGCCgucggccaacuucGCCGCCgucggCACCCc -3'
miRNA:   3'- gCAUGGCCAU-CGG-------------CGGCGGg----GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 13094 0.73 0.130958
Target:  5'- gGUucGCgCGGU-GCaCGCCGCCCCACCgGc -3'
miRNA:   3'- gCA--UG-GCCAuCG-GCGGCGGGGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 13690 0.66 0.42084
Target:  5'- gGUgGCCGGUucgGGCaCGCCGaagaucauCCCgACCCa -3'
miRNA:   3'- gCA-UGGCCA---UCG-GCGGC--------GGGgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 15160 0.72 0.173392
Target:  5'- --aGCUGGccGCCGCCGCCaCgCACCUGg -3'
miRNA:   3'- gcaUGGCCauCGGCGGCGG-G-GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 15163 0.67 0.354362
Target:  5'- cCGcGCCGauaaGGCCGUCGaCCUCAUCCGg -3'
miRNA:   3'- -GCaUGGCca--UCGGCGGC-GGGGUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.