Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18977 | 3' | -63.3 | NC_004684.1 | + | 27034 | 0.66 | 0.378406 |
Target: 5'- gGUGCCGGUGGCauuguGuCCaGCCUCAUCUc -3' miRNA: 3'- gCAUGGCCAUCGg----C-GG-CGGGGUGGGc -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 43632 | 0.66 | 0.378406 |
Target: 5'- gGUACCucaccguucggaGGUggcgcAGCCaCCGCuCCCGCCCc -3' miRNA: 3'- gCAUGG------------CCA-----UCGGcGGCG-GGGUGGGc -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 52457 | 0.66 | 0.37027 |
Target: 5'- --cACCGGgauGCCcgacggcaugGCCGCCaCCACCUc -3' miRNA: 3'- gcaUGGCCau-CGG----------CGGCGG-GGUGGGc -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 3453 | 0.66 | 0.395032 |
Target: 5'- ----aCGGUGuUCGCCGUCUCGCCCa -3' miRNA: 3'- gcaugGCCAUcGGCGGCGGGGUGGGc -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 54253 | 0.66 | 0.37027 |
Target: 5'- cCGcGCCGGgacAGCUccucaGCCagcGCCgCCACCCGg -3' miRNA: 3'- -GCaUGGCCa--UCGG-----CGG---CGG-GGUGGGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 37599 | 0.66 | 0.38666 |
Target: 5'- gGUACCGuGcgGGCCcgGCCGCCCaugCCGa -3' miRNA: 3'- gCAUGGC-Ca-UCGG--CGGCGGGgugGGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 49790 | 0.66 | 0.38666 |
Target: 5'- aGUGCCGGgaucAGCuCGuaGUCCUcCCCGg -3' miRNA: 3'- gCAUGGCCa---UCG-GCggCGGGGuGGGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 59957 | 0.66 | 0.38666 |
Target: 5'- uGUGCUGGcGG-CGCUcguGCCgCACCCGg -3' miRNA: 3'- gCAUGGCCaUCgGCGG---CGGgGUGGGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 10148 | 0.66 | 0.38666 |
Target: 5'- uCGUGCUcagccAGCCGCCGCUggCCACCgCGc -3' miRNA: 3'- -GCAUGGcca--UCGGCGGCGG--GGUGG-GC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 50429 | 0.66 | 0.42084 |
Target: 5'- cCGaUGCCaaGGaGGCCGcCCGCCUgGCCgGg -3' miRNA: 3'- -GC-AUGG--CCaUCGGC-GGCGGGgUGGgC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 1631 | 0.66 | 0.378406 |
Target: 5'- gGUugUGGgGGCCGCUGgUgCCACCuCGg -3' miRNA: 3'- gCAugGCCaUCGGCGGC-GgGGUGG-GC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 13690 | 0.66 | 0.42084 |
Target: 5'- gGUgGCCGGUucgGGCaCGCCGaagaucauCCCgACCCa -3' miRNA: 3'- gCA-UGGCCA---UCG-GCGGC--------GGGgUGGGc -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 47171 | 0.66 | 0.395032 |
Target: 5'- cCGUAgCGGcGGCCaggGCCGCCgCUGCgCGg -3' miRNA: 3'- -GCAUgGCCaUCGG---CGGCGG-GGUGgGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 5921 | 0.66 | 0.412124 |
Target: 5'- aCG-ACCGGcUGGCCG-CGCUggCCACCgGg -3' miRNA: 3'- -GCaUGGCC-AUCGGCgGCGG--GGUGGgC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 54972 | 0.66 | 0.412124 |
Target: 5'- gGUgaACgGGUGGCCGCCGa-CCACagCGg -3' miRNA: 3'- gCA--UGgCCAUCGGCGGCggGGUGg-GC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 61320 | 0.66 | 0.412124 |
Target: 5'- --cGCCGG--GCCGCCGCCCuCGgCgGc -3' miRNA: 3'- gcaUGGCCauCGGCGGCGGG-GUgGgC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 24162 | 0.66 | 0.403521 |
Target: 5'- gGUGCaggguccgcaggCGGU-GCCGCCGCCCaaaAUgCCGg -3' miRNA: 3'- gCAUG------------GCCAuCGGCGGCGGGg--UG-GGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 16460 | 0.66 | 0.377587 |
Target: 5'- uGUGCCGGguguacucGGCCGCCagcuugucggccaGCgCCAgCCGc -3' miRNA: 3'- gCAUGGCCa-------UCGGCGG-------------CGgGGUgGGC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 63298 | 0.66 | 0.37027 |
Target: 5'- --cGCCGGUGGCCgagaagaugggGCCGUUCgGCCgCGu -3' miRNA: 3'- gcaUGGCCAUCGG-----------CGGCGGGgUGG-GC- -5' |
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18977 | 3' | -63.3 | NC_004684.1 | + | 30873 | 0.66 | 0.37027 |
Target: 5'- gGUGCCGGacAGCaGCa--CCCACCCGu -3' miRNA: 3'- gCAUGGCCa-UCGgCGgcgGGGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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