miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 58446 0.69 0.273725
Target:  5'- cCGUGCCGGacccgacugcccgcUgaGGCCagcgcgaacuuGCCGCgCCCGCCCu -3'
miRNA:   3'- -GCAUGGCC--------------A--UCGG-----------CGGCG-GGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 55151 0.7 0.22219
Target:  5'- uGUGgCGGUggAGCCGCUGCCggaagCACCCc -3'
miRNA:   3'- gCAUgGCCA--UCGGCGGCGGg----GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 44767 0.7 0.233256
Target:  5'- uGUACCGGcgaCCGUCgggGCCCCGCCaCGa -3'
miRNA:   3'- gCAUGGCCaucGGCGG---CGGGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 49613 0.69 0.244781
Target:  5'- uCGUugCGGcUGGCCGgUGUCCaGCCCa -3'
miRNA:   3'- -GCAugGCC-AUCGGCgGCGGGgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 57287 0.69 0.244781
Target:  5'- uGUGaCGGcgAGCCGCaccccggccaGCCCUGCCCGg -3'
miRNA:   3'- gCAUgGCCa-UCGGCGg---------CGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 42853 0.69 0.244781
Target:  5'- aCGaGCgCGGUggggccaaccaGGCCGCCGCa-CGCCCGg -3'
miRNA:   3'- -GCaUG-GCCA-----------UCGGCGGCGggGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 12915 0.69 0.256164
Target:  5'- gGUGCCGGUGcGCCgucggccaacuucGCCGCCgucggCACCCc -3'
miRNA:   3'- gCAUGGCCAU-CGG-------------CGGCGGg----GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 1236 0.69 0.269246
Target:  5'- gCGgcCUGGUcGGUCGCCcgGCCCCgGCCCa -3'
miRNA:   3'- -GCauGGCCA-UCGGCGG--CGGGG-UGGGc -5'
18977 3' -63.3 NC_004684.1 + 36746 0.69 0.269246
Target:  5'- cCGUcCCGGcgcugacGCCGCCaggGCCgCGCCCGg -3'
miRNA:   3'- -GCAuGGCCau-----CGGCGG---CGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 11372 0.7 0.208476
Target:  5'- gGUGCCGGUgguggcguccaucguGGCCucguucacGCCGaccaCCUACCCGg -3'
miRNA:   3'- gCAUGGCCA---------------UCGG--------CGGCg---GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 61591 0.71 0.201399
Target:  5'- aCGccUCGGUGGUCGaggCGUCCCGCCCGc -3'
miRNA:   3'- -GCauGGCCAUCGGCg--GCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 16836 0.71 0.196472
Target:  5'- --aGCgGGUcGCCGCCGCUCUACCg- -3'
miRNA:   3'- gcaUGgCCAuCGGCGGCGGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 57827 0.75 0.090814
Target:  5'- gGUcCCGGcggugcUGGCCGCCGguaCCCGCCCGa -3'
miRNA:   3'- gCAuGGCC------AUCGGCGGCg--GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 13094 0.73 0.130958
Target:  5'- gGUucGCgCGGU-GCaCGCCGCCCCACCgGc -3'
miRNA:   3'- gCA--UG-GCCAuCG-GCGGCGGGGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 43406 0.72 0.1567
Target:  5'- --aACgGGUcGCCGCCGCCgaACCCGa -3'
miRNA:   3'- gcaUGgCCAuCGGCGGCGGggUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 49226 0.72 0.164856
Target:  5'- gGUGCCGGgccgggcgucGGCaCGUCGCCCCACagCGg -3'
miRNA:   3'- gCAUGGCCa---------UCG-GCGGCGGGGUGg-GC- -5'
18977 3' -63.3 NC_004684.1 + 15160 0.72 0.173392
Target:  5'- --aGCUGGccGCCGCCGCCaCgCACCUGg -3'
miRNA:   3'- gcaUGGCCauCGGCGGCGG-G-GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 7900 0.71 0.182319
Target:  5'- gCGUGCCcuGGUGGCCGCCaGCCa-GCCgGu -3'
miRNA:   3'- -GCAUGG--CCAUCGGCGG-CGGggUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 28078 0.71 0.182319
Target:  5'- uGUgGCCGG--GCCGCCGCgCgACCCGc -3'
miRNA:   3'- gCA-UGGCCauCGGCGGCGgGgUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 9856 0.71 0.186934
Target:  5'- --cGCCGGUgAGCUGCCGCCggauCCCGa -3'
miRNA:   3'- gcaUGGCCA-UCGGCGGCGGggu-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.