miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 1483 1.09 0.000282
Target:  5'- cCGUACCGGUAGCCGCCGCCCCACCCGg -3'
miRNA:   3'- -GCAUGGCCAUCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 33617 0.69 0.269246
Target:  5'- gGUGCCGuacgaccccGCauaGCCGCCaCCGCCCGc -3'
miRNA:   3'- gCAUGGCcau------CGg--CGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 40210 0.68 0.282201
Target:  5'- gGUGCCGa-GGCCGCCaGCgCCCGCUaCGg -3'
miRNA:   3'- gCAUGGCcaUCGGCGG-CG-GGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 50429 0.66 0.42084
Target:  5'- cCGaUGCCaaGGaGGCCGcCCGCCUgGCCgGg -3'
miRNA:   3'- -GC-AUGG--CCaUCGGC-GGCGGGgUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 5996 0.74 0.121167
Target:  5'- --aGCCGGUcgugcgcgaucAG-CGCCGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGCCA-----------UCgGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 65541 0.73 0.137532
Target:  5'- gGUACCGGcgcacggUGGCCGCgCGCCgCACgCCa -3'
miRNA:   3'- gCAUGGCC-------AUCGGCG-GCGGgGUG-GGc -5'
18977 3' -63.3 NC_004684.1 + 59988 0.72 0.173392
Target:  5'- --gGCCGGUucgugcGCCGCCGCaucgggguggaCCUGCCCGg -3'
miRNA:   3'- gcaUGGCCAu-----CGGCGGCG-----------GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25449 0.71 0.177806
Target:  5'- --gACCGGguccaucaGGCCGCCGCCaaggCCACCgGg -3'
miRNA:   3'- gcaUGGCCa-------UCGGCGGCGG----GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 47057 0.7 0.211575
Target:  5'- gGUACUGGUGGCaGCCGCUgCGuugcaucauCCCGa -3'
miRNA:   3'- gCAUGGCCAUCGgCGGCGGgGU---------GGGC- -5'
18977 3' -63.3 NC_004684.1 + 20874 0.69 0.256775
Target:  5'- gCGUGCCGGUGGCuuCGggGCCaCCGCCUc -3'
miRNA:   3'- -GCAUGGCCAUCG--GCggCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 49282 0.7 0.22219
Target:  5'- cCG-ACCGagcaGGCCGCCGCCgCCGCCg- -3'
miRNA:   3'- -GCaUGGCca--UCGGCGGCGG-GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 66747 0.71 0.195985
Target:  5'- --cGCCGGUgaccgGGCCGCCGCCgaggccaucguggCCACCa- -3'
miRNA:   3'- gcaUGGCCA-----UCGGCGGCGG-------------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 39543 0.75 0.093245
Target:  5'- aCGaGCCaGGUAGCCGCaCGCCUCgGCCUGg -3'
miRNA:   3'- -GCaUGG-CCAUCGGCG-GCGGGG-UGGGC- -5'
18977 3' -63.3 NC_004684.1 + 19609 0.69 0.238385
Target:  5'- --aGCUGGcguugAGCCagugcguGCCGUCCCACCCa -3'
miRNA:   3'- gcaUGGCCa----UCGG-------CGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 34248 0.75 0.106348
Target:  5'- gCGUGCCGGUgAGCagcaCCGUgCCGCCCGa -3'
miRNA:   3'- -GCAUGGCCA-UCGgc--GGCGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 43546 0.71 0.191651
Target:  5'- --cGCCGcaccuGCUGCCGCCCCGCCg- -3'
miRNA:   3'- gcaUGGCcau--CGGCGGCGGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 35113 0.69 0.256775
Target:  5'- -uUGCUGGUGacccauucgcgcGCCGCaCGCgUCACCCGg -3'
miRNA:   3'- gcAUGGCCAU------------CGGCG-GCGgGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 18544 0.68 0.282201
Target:  5'- --aGCuCGGU-GCCGUCGUCCUGCUCGg -3'
miRNA:   3'- gcaUG-GCCAuCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 1132 0.74 0.117751
Target:  5'- --aACCGGU-GCCGCCauuucugGCCCCACgCCGc -3'
miRNA:   3'- gcaUGGCCAuCGGCGG-------CGGGGUG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 22438 0.72 0.152761
Target:  5'- --cGCCGcc-GCCGCCGCCaCCGCCUGu -3'
miRNA:   3'- gcaUGGCcauCGGCGGCGG-GGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.