miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 15783 0.68 0.302552
Target:  5'- aCGaUGCCGGUGGCgucggUGCCGCCgCUGgCCa -3'
miRNA:   3'- -GC-AUGGCCAUCG-----GCGGCGG-GGUgGGc -5'
18977 3' -63.3 NC_004684.1 + 15870 0.66 0.403521
Target:  5'- aCGuUGCCGGU-GUCGCCGCCgcgauaggugCCGCUg- -3'
miRNA:   3'- -GC-AUGGCCAuCGGCGGCGG----------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 16002 0.68 0.288862
Target:  5'- gGUGCCGGguaGGCCuCUGCCgggaCGCCCu -3'
miRNA:   3'- gCAUGGCCa--UCGGcGGCGGg---GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 16460 0.66 0.377587
Target:  5'- uGUGCCGGguguacucGGCCGCCagcuugucggccaGCgCCAgCCGc -3'
miRNA:   3'- gCAUGGCCa-------UCGGCGG-------------CGgGGUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 16836 0.71 0.196472
Target:  5'- --aGCgGGUcGCCGCCGCUCUACCg- -3'
miRNA:   3'- gcaUGgCCAuCGGCGGCGGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 18544 0.68 0.282201
Target:  5'- --aGCuCGGU-GCCGUCGUCCUGCUCGg -3'
miRNA:   3'- gcaUG-GCCAuCGGCGGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 19609 0.69 0.238385
Target:  5'- --aGCUGGcguugAGCCagugcguGCCGUCCCACCCa -3'
miRNA:   3'- gcaUGGCCa----UCGG-------CGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 20874 0.69 0.256775
Target:  5'- gCGUGCCGGUGGCuuCGggGCCaCCGCCUc -3'
miRNA:   3'- -GCAUGGCCAUCG--GCggCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 21069 0.66 0.395032
Target:  5'- uCGgGCCGaccugcGCCGCCGCUCCGaCCGg -3'
miRNA:   3'- -GCaUGGCcau---CGGCGGCGGGGUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 22270 0.67 0.324014
Target:  5'- --aGgCGGUcGCCGCCGCCgUgGCCCu -3'
miRNA:   3'- gcaUgGCCAuCGGCGGCGG-GgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 22438 0.72 0.152761
Target:  5'- --cGCCGcc-GCCGCCGCCaCCGCCUGu -3'
miRNA:   3'- gcaUGGCcauCGGCGGCGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 22895 0.66 0.398414
Target:  5'- -cUGCCGGUcgaccagcguguugaAGUCGCCaGCCaCGCCCu -3'
miRNA:   3'- gcAUGGCCA---------------UCGGCGG-CGGgGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 24162 0.66 0.403521
Target:  5'- gGUGCaggguccgcaggCGGU-GCCGCCGCCCaaaAUgCCGg -3'
miRNA:   3'- gCAUG------------GCCAuCGGCGGCGGGg--UG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 24546 0.67 0.338941
Target:  5'- uGUGCCGG--GCCGCgauagCGUCCCGgCCa -3'
miRNA:   3'- gCAUGGCCauCGGCG-----GCGGGGUgGGc -5'
18977 3' -63.3 NC_004684.1 + 24934 0.67 0.338941
Target:  5'- aCGgcCCGGUGGCgcuaCCGCUgCCGCCCu -3'
miRNA:   3'- -GCauGGCCAUCGgc--GGCGG-GGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 25300 0.67 0.34659
Target:  5'- gCGUGCCGGUgaAGCCaCCcgguGCCagCGCCUGg -3'
miRNA:   3'- -GCAUGGCCA--UCGGcGG----CGGg-GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25449 0.71 0.177806
Target:  5'- --gACCGGguccaucaGGCCGCCGCCaaggCCACCgGg -3'
miRNA:   3'- gcaUGGCCa-------UCGGCGGCGG----GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 25765 0.67 0.362255
Target:  5'- gCGUugccGCCGuaGGUCG-CGCCCUGCCCGg -3'
miRNA:   3'- -GCA----UGGCcaUCGGCgGCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 25926 0.67 0.324014
Target:  5'- --cGCCGaGcaucUGGCCGCCgaugccguucugGCCgCCACCCGg -3'
miRNA:   3'- gcaUGGC-C----AUCGGCGG------------CGG-GGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 26440 0.67 0.34659
Target:  5'- --cGCCGGUGGCCcgguguacggcgGCaCGCCUgGCCgCGa -3'
miRNA:   3'- gcaUGGCCAUCGG------------CG-GCGGGgUGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.