miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 66747 0.71 0.195985
Target:  5'- --cGCCGGUgaccgGGCCGCCGCCgaggccaucguggCCACCa- -3'
miRNA:   3'- gcaUGGCCA-----UCGGCGGCGG-------------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 66590 0.68 0.316736
Target:  5'- gCGgcCCGcGaGGCCGCCGCCaaggccuagccgCCACCgGg -3'
miRNA:   3'- -GCauGGC-CaUCGGCGGCGG------------GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 65541 0.73 0.137532
Target:  5'- gGUACCGGcgcacggUGGCCGCgCGCCgCACgCCa -3'
miRNA:   3'- gCAUGGCC-------AUCGGCG-GCGGgGUG-GGc -5'
18977 3' -63.3 NC_004684.1 + 63298 0.66 0.37027
Target:  5'- --cGCCGGUGGCCgagaagaugggGCCGUUCgGCCgCGu -3'
miRNA:   3'- gcaUGGCCAUCGG-----------CGGCGGGgUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 62015 0.68 0.309582
Target:  5'- --gGCgGGU-GCCGUgGCCCgCACCCc -3'
miRNA:   3'- gcaUGgCCAuCGGCGgCGGG-GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 61856 0.66 0.395032
Target:  5'- gGUGCUGG-AGCUGgaCGCCUgguuCGCCCGu -3'
miRNA:   3'- gCAUGGCCaUCGGCg-GCGGG----GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 61591 0.71 0.201399
Target:  5'- aCGccUCGGUGGUCGaggCGUCCCGCCCGc -3'
miRNA:   3'- -GCauGGCCAUCGGCg--GCGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 61320 0.66 0.412124
Target:  5'- --cGCCGG--GCCGCCGCCCuCGgCgGc -3'
miRNA:   3'- gcaUGGCCauCGGCGGCGGG-GUgGgC- -5'
18977 3' -63.3 NC_004684.1 + 61164 0.68 0.309582
Target:  5'- gCGUugCGG-AGacaaUGCCGCCaCCGgCCCGu -3'
miRNA:   3'- -GCAugGCCaUCg---GCGGCGG-GGU-GGGC- -5'
18977 3' -63.3 NC_004684.1 + 61066 0.69 0.275016
Target:  5'- aCGgGCCGGUGGCgGCauugucuccgcaaCGCCgCCACCgGu -3'
miRNA:   3'- -GCaUGGCCAUCGgCG-------------GCGG-GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 60268 0.67 0.362255
Target:  5'- uGUACCucggcGGUGGCgGuuGCgUgGCCCGg -3'
miRNA:   3'- gCAUGG-----CCAUCGgCggCGgGgUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 59988 0.72 0.173392
Target:  5'- --gGCCGGUucgugcGCCGCCGCaucgggguggaCCUGCCCGg -3'
miRNA:   3'- gcaUGGCCAu-----CGGCGGCG-----------GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 59957 0.66 0.38666
Target:  5'- uGUGCUGGcGG-CGCUcguGCCgCACCCGg -3'
miRNA:   3'- gCAUGGCCaUCgGCGG---CGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 58902 0.68 0.302552
Target:  5'- --cACCGucucGCCGuccCCGCCCCACCCc -3'
miRNA:   3'- gcaUGGCcau-CGGC---GGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 58446 0.69 0.273725
Target:  5'- cCGUGCCGGacccgacugcccgcUgaGGCCagcgcgaacuuGCCGCgCCCGCCCu -3'
miRNA:   3'- -GCAUGGCC--------------A--UCGG-----------CGGCG-GGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 58359 0.68 0.295645
Target:  5'- gCGuUGCCGcGccGGuuGCCGCCCCGCaCGg -3'
miRNA:   3'- -GC-AUGGC-Ca-UCggCGGCGGGGUGgGC- -5'
18977 3' -63.3 NC_004684.1 + 58263 0.67 0.324014
Target:  5'- gGUGCUGGUGGCgGCacaGUCgCACCgGc -3'
miRNA:   3'- gCAUGGCCAUCGgCGg--CGGgGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 57827 0.75 0.090814
Target:  5'- gGUcCCGGcggugcUGGCCGCCGguaCCCGCCCGa -3'
miRNA:   3'- gCAuGGCC------AUCGGCGGCg--GGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 57287 0.69 0.244781
Target:  5'- uGUGaCGGcgAGCCGCaccccggccaGCCCUGCCCGg -3'
miRNA:   3'- gCAUgGCCa-UCGGCGg---------CGGGGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 55151 0.7 0.22219
Target:  5'- uGUGgCGGUggAGCCGCUGCCggaagCACCCc -3'
miRNA:   3'- gCAUgGCCA--UCGGCGGCGGg----GUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.