miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 5' -54.1 NC_004684.1 + 5157 0.66 0.83732
Target:  5'- cACCGGGucuggaucAGGAucgUGGGAGCgccGGGUGCc -3'
miRNA:   3'- -UGGCUC--------UUCUu--GCCCUCGaa-CUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 62806 0.66 0.83732
Target:  5'- uGCCGGGcAGGcGgGGGAGCUUucaggccgaccGGGUGUc -3'
miRNA:   3'- -UGGCUC-UUCuUgCCCUCGAA-----------CUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 19335 0.66 0.828424
Target:  5'- cGCCGuGGccGAGCGGGAggcGCUgauccagcGGCGCa -3'
miRNA:   3'- -UGGC-UCuuCUUGCCCU---CGAac------UCGCG- -5'
18977 5' -54.1 NC_004684.1 + 7004 0.66 0.810027
Target:  5'- gACCaGGuAGAGCGGGAugucGCgcaGGCGCa -3'
miRNA:   3'- -UGGcUCuUCUUGCCCU----CGaacUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 9320 0.66 0.810027
Target:  5'- cGCCGAGGaacAGGACGGGGaCgagGAG-GCc -3'
miRNA:   3'- -UGGCUCU---UCUUGCCCUcGaa-CUCgCG- -5'
18977 5' -54.1 NC_004684.1 + 7362 0.66 0.810027
Target:  5'- cGCCGuGGAGAACGcauccGAGCUgugcuggugGAuGCGCc -3'
miRNA:   3'- -UGGCuCUUCUUGCc----CUCGAa--------CU-CGCG- -5'
18977 5' -54.1 NC_004684.1 + 53363 0.66 0.79863
Target:  5'- cCCGGu--GggUGGGAGCcgaugacaccgGAGCGCg -3'
miRNA:   3'- uGGCUcuuCuuGCCCUCGaa---------CUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 4106 0.67 0.771103
Target:  5'- uGCCGGu--GAACGGcAGCagguggUGGGCGCa -3'
miRNA:   3'- -UGGCUcuuCUUGCCcUCGa-----ACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 4301 0.67 0.76099
Target:  5'- cACaCGAGuGGGACGcGGuGCaccGGGCGCa -3'
miRNA:   3'- -UG-GCUCuUCUUGC-CCuCGaa-CUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 12143 0.67 0.76099
Target:  5'- aGCCGAcugcugGAAGGACGuGGcuaauGGCgugUGGGUGCc -3'
miRNA:   3'- -UGGCU------CUUCUUGC-CC-----UCGa--ACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 19703 0.68 0.740384
Target:  5'- gGCCGAGccAAGAccUGGGAcgGCcacucggUGAGCGCg -3'
miRNA:   3'- -UGGCUC--UUCUu-GCCCU--CGa------ACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 16769 0.68 0.719345
Target:  5'- cGCgGGGAuGAGCGGGgaccaggugcGGCgcgucguguggUGGGCGCg -3'
miRNA:   3'- -UGgCUCUuCUUGCCC----------UCGa----------ACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 49127 0.68 0.708692
Target:  5'- uGCCGAGGAGGA--GGAGCcu--GCGCc -3'
miRNA:   3'- -UGGCUCUUCUUgcCCUCGaacuCGCG- -5'
18977 5' -54.1 NC_004684.1 + 52894 0.68 0.708692
Target:  5'- cACCGAGGAGGagcGCGaGGAGaaccgccAGCGCc -3'
miRNA:   3'- -UGGCUCUUCU---UGC-CCUCgaac---UCGCG- -5'
18977 5' -54.1 NC_004684.1 + 35416 0.68 0.697964
Target:  5'- cGCCGAGGAGcGCGGGAGgCgaugGuccCGCc -3'
miRNA:   3'- -UGGCUCUUCuUGCCCUC-Gaa--Cuc-GCG- -5'
18977 5' -54.1 NC_004684.1 + 65735 0.68 0.687174
Target:  5'- gACCGGGuaggucGGGACcGGAGCUgc-GCGCg -3'
miRNA:   3'- -UGGCUCu-----UCUUGcCCUCGAacuCGCG- -5'
18977 5' -54.1 NC_004684.1 + 43517 0.69 0.676331
Target:  5'- -gCGGcAGGGGCGGGAGCggUGGcuGCGCc -3'
miRNA:   3'- ugGCUcUUCUUGCCCUCGa-ACU--CGCG- -5'
18977 5' -54.1 NC_004684.1 + 40720 0.69 0.665447
Target:  5'- gGCCGGGAcGAccagcgcgGCGGGGGCgguGGCGg -3'
miRNA:   3'- -UGGCUCUuCU--------UGCCCUCGaacUCGCg -5'
18977 5' -54.1 NC_004684.1 + 33857 0.69 0.662175
Target:  5'- cGCCGAGAucccguuguagcugAGGuCGGGGGCguccUGGccGCGCu -3'
miRNA:   3'- -UGGCUCU--------------UCUuGCCCUCGa---ACU--CGCG- -5'
18977 5' -54.1 NC_004684.1 + 11804 0.69 0.654532
Target:  5'- cACCGuGGAGAA-GGGcGC--GAGCGCg -3'
miRNA:   3'- -UGGCuCUUCUUgCCCuCGaaCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.