Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 11804 | 0.69 | 0.654532 |
Target: 5'- cACCGuGGAGAA-GGGcGC--GAGCGCg -3' miRNA: 3'- -UGGCuCUUCUUgCCCuCGaaCUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 35532 | 0.7 | 0.621704 |
Target: 5'- cACCGAGugcGGGcACGaGGAGCcgcgaUGAGCGUc -3' miRNA: 3'- -UGGCUCu--UCU-UGC-CCUCGa----ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 57358 | 0.7 | 0.567289 |
Target: 5'- cGCCGGuGAGGGCGGGGuCUUuuGCGCg -3' miRNA: 3'- -UGGCUcUUCUUGCCCUcGAAcuCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 59693 | 0.7 | 0.567289 |
Target: 5'- cGCCGAGcuGcGCGGGGuGCggGuGCGCa -3' miRNA: 3'- -UGGCUCuuCuUGCCCU-CGaaCuCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 62016 | 0.7 | 0.56621 |
Target: 5'- -gCGAcGGGGACGGGGGCcacggggUUGAGCGg -3' miRNA: 3'- ugGCUcUUCUUGCCCUCG-------AACUCGCg -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 63291 | 0.71 | 0.535196 |
Target: 5'- gGCCGAGAAGAugGGGccGUUcGGcCGCg -3' miRNA: 3'- -UGGCUCUUCUugCCCu-CGAaCUcGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 44630 | 0.72 | 0.503765 |
Target: 5'- cGCCGGGggGAGCGGGuacucGGCccacuGCGUc -3' miRNA: 3'- -UGGCUCuuCUUGCCC-----UCGaacu-CGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 9190 | 0.72 | 0.503765 |
Target: 5'- cGCCG-GAAGGuUGGGcGCagUGGGCGCg -3' miRNA: 3'- -UGGCuCUUCUuGCCCuCGa-ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 20168 | 0.74 | 0.396549 |
Target: 5'- gUCGGGGuuGAACGccAGCUUGAGCGCg -3' miRNA: 3'- uGGCUCUu-CUUGCccUCGAACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 3168 | 0.75 | 0.336423 |
Target: 5'- aACCGGGAgcacGGAGCGGGGGUcgaucaucGGCGCg -3' miRNA: 3'- -UGGCUCU----UCUUGCCCUCGaac-----UCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 1448 | 1.12 | 0.001005 |
Target: 5'- cACCGAGAAGAACGGGAGCUUGAGCGCg -3' miRNA: 3'- -UGGCUCUUCUUGCCCUCGAACUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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