miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 24842 0.72 0.269664
Target:  5'- gCGGCAGCGGUaGCGCCaccgGGCCguUCGGc -3'
miRNA:   3'- -GUUGUCGUCG-CGCGGcua-CCGG--AGCC- -5'
18978 3' -58.7 NC_004684.1 + 50027 0.72 0.269664
Target:  5'- uCGGCGGCAGCGUgGCCGGUG-CCU-GGc -3'
miRNA:   3'- -GUUGUCGUCGCG-CGGCUACcGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 22713 0.72 0.276351
Target:  5'- uGGCGGCGGCcucccacaGCGCCGuaacGGCCUCa- -3'
miRNA:   3'- gUUGUCGUCG--------CGCGGCua--CCGGAGcc -5'
18978 3' -58.7 NC_004684.1 + 61667 0.72 0.283169
Target:  5'- gUAGCAGguGUGCGCCugcacgccauUGGCgUCGGu -3'
miRNA:   3'- -GUUGUCguCGCGCGGcu--------ACCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 44673 0.72 0.29012
Target:  5'- -uGCGGCGGCGCgauGCCGAugucgcUGGCgUCGa -3'
miRNA:   3'- guUGUCGUCGCG---CGGCU------ACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 33709 0.71 0.297203
Target:  5'- cCAGCGGCAGCG-G-CGGUGGCC-CGa -3'
miRNA:   3'- -GUUGUCGUCGCgCgGCUACCGGaGCc -5'
18978 3' -58.7 NC_004684.1 + 55786 0.71 0.297203
Target:  5'- uCGAUGGCGGCGUGaCCgGGUGGUC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCGC-GG-CUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 3499 0.71 0.304421
Target:  5'- cCAGCGGUgccAGgGUGCCGuUGGUCUCGa -3'
miRNA:   3'- -GUUGUCG---UCgCGCGGCuACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 66633 0.71 0.304421
Target:  5'- -uGCGGCcuuGGUG-GCCacGAUGGCCUCGGc -3'
miRNA:   3'- guUGUCG---UCGCgCGG--CUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 42410 0.71 0.311772
Target:  5'- ---gGGCGGcCGgGuuGGUGGCCUCGa -3'
miRNA:   3'- guugUCGUC-GCgCggCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 25306 0.71 0.314003
Target:  5'- gCGGCGGCGGUucgucggcccuggcgGCGuauggcggccuccCCGGUGGCCUUGGc -3'
miRNA:   3'- -GUUGUCGUCG---------------CGC-------------GGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 29407 0.71 0.326876
Target:  5'- uCAGCGGCGuGCGCGUcuugCGGUaguaGGCaCUCGGg -3'
miRNA:   3'- -GUUGUCGU-CGCGCG----GCUA----CCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 49286 0.71 0.326876
Target:  5'- aCAcCGGCcuCGCGCuCGGUGGCCUUGc -3'
miRNA:   3'- -GUuGUCGucGCGCG-GCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 21411 0.71 0.334629
Target:  5'- -uGCGGCGGuCGCGCCGGaccaccGCCUCGc -3'
miRNA:   3'- guUGUCGUC-GCGCGGCUac----CGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 12827 0.71 0.334629
Target:  5'- gGACGGCGGCucuGCuGCCGAcgUGGUCgCGGa -3'
miRNA:   3'- gUUGUCGUCG---CG-CGGCU--ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 11716 0.71 0.334629
Target:  5'- cCGACGGUcaGGCG-GCCGAcGGCCagcUCGGu -3'
miRNA:   3'- -GUUGUCG--UCGCgCGGCUaCCGG---AGCC- -5'
18978 3' -58.7 NC_004684.1 + 15791 0.7 0.342516
Target:  5'- cCGGgAGCA-CGaUGCCGGUGGCgUCGGu -3'
miRNA:   3'- -GUUgUCGUcGC-GCGGCUACCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 19836 0.7 0.350536
Target:  5'- uGACGGCGGCGCauGCCGGUuGCCgCGc -3'
miRNA:   3'- gUUGUCGUCGCG--CGGCUAcCGGaGCc -5'
18978 3' -58.7 NC_004684.1 + 24566 0.7 0.350536
Target:  5'- cCGGCGGUAGCGCGCUGAucUGGagcUGGa -3'
miRNA:   3'- -GUUGUCGUCGCGCGGCU--ACCggaGCC- -5'
18978 3' -58.7 NC_004684.1 + 40356 0.7 0.350536
Target:  5'- uGGCGGCGGCcuugGCCuuGggGGCCUCGGc -3'
miRNA:   3'- gUUGUCGUCGcg--CGG--CuaCCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.